result

Gene information

Detail information of g504289

Location

Gene	Chr	Start	End	Strand
g504289	Scaffold_88735:HRSCAF_471821	106674	110175	-

Sequences

CDS

Protein

Gene

>g504289.t1
ATGGATATAGTAAAAGGTAAATCTTACCAGTAATAACTAGAATATATTTTATGAGATTTGTTTTATTTATGTTTATTCTGTGAATCACTGCTGAAATATTCGGTATTGCAACATTATCATCAAGTTACTGCAATTGATAACAAAGTTTTGATGCATGCCATGTCTACTAGTTTATTTCGTGTCCACGAGTCAAGAACAATGTCTATAGCTTTTGTATTCTGGGTGGAAACCTTTTTTGTCGTTTTTGTTTCTAAGCTTATGATGGTTATAGATATCCCTTTACTTCCCTATATGTAGATAGTTATAGAAAAACAAAACCATGATTTGCACATGTTATTGTCATTGTTGCTTTCAGCTTTGAAGAAGGTTGTACCTTCGGCTCCTTTATAACTACGTCTTCTTCATTTAGAAATCGCATTAAACAAGTTTTCTAGTCCAATTGTTTTAGTTTTCATAAACCATTGCTTAAGGTGCTTAACATTTATAAGAATGGTAAAATTGCAGTACAAGTGGTTATTCACTACAAAATTAATTTAACGCTTTTTTAAAAAGTCAATTATTTTTGTGCAAATTTTCATTCAAACTGTATAACTTTATTTTTTACAAGATATACAAATTCAATGCATATACTTTTAATCAAATTTTATAATTTCTCCATAAATTTTGACCAAATAGTCCGTGAATGGTTATTGTGCTGAATTGGTAGCTGACAATGACATTTTCAATCAAATGGTATATTTATCACATCACCGAGGCAATAAAAAATAATCGCAAGATAGAAGAGTAAGAAACTTGAAAACCATATATCATCTTCCTTTTCTGTTTTTGTAAAGCAATATTTTCATTACAAGTGACAACTGTACAGAATTGATTTGGGATACTGCTGTAGAGAATTGACTCGTGGACACGAAATAATTTAGTAGTTTTATTGCATCATTATCTTCAAGGTACAACAATTCTTCACTTAGCAATAGCATACATTTTAAAGTAAGAGACAATGTTCCGCATTGCAATAACATCATTATCATCAGATTCTGACTTCCTAATGTTGATTAAGATCTAATGGGCATTGTTTTTGATTTGAATCGTCTAGCAGTTTTGTTTGTTTATCTAATTACCCATTGTGTTGACATGGAGAAATATTTTATCTGATTGTATTTCGTGGTTAATATGAAAGATGATTTTGTTATTCAATTCACAACACAGAATTTTTAATATTAAATCGATTATATAATCATGTTTTAGATGTTATCAATTAGTCGATTAGTCTTGCAAACGTTTATTTTGTGTAGAATCTGACATTCTTTTTTATTACTTAGCTTTTCGAGGCATTGAATTAACTGGGTTTAGTTTTTTTTTTTGATTTTCTTGTATCTGCTGCTATTGCGGAGTTCAAAAGTCCTGTTATTTTTTGAATTGTGTGCGTAGTTCAAGTGAACGTGGAGTTGGCAAGAATTGATGCAAATTTCAATGGATTGTCACCGGGCAAACATAGATGTGCTATTAATGAATTTGGATTTTGGCGATTTGACTAGAGGTACATAAAGCAGTGGTAAAATATAAAATCTGATAAACAGTACTTTAGAAAAGGTTATTACACTTTAGAAAATTCGATATACACCACTGGCTTTTGCTTTTGACTATGAAGTATGAAACATTGTTGATAATGCTTTTGAATAGATGACTACTGCAGGTAGAGAAATCATTCAAACCCTTGCTAATTTTGTTATTAATTACCTAAACATAGACCAAATATGGCAGTACAGGAAATATGGTCCAGGGGAGACTGGTTGTTTGTGACTGGGAAGGGTGGTTTTGAGATGAGTGGGTGAGGTACAGGCTGGGGTATAAGAGATGGAGAAGGAGGTAAGGTCAGCTGTGTTTCATGAAGTTGGAGATACAAGTTATATTTAGAAGAGAGTTATGTAAACGGAGAAGTGTAATGTCTATATAGAAATGAAGCCTTAAAATAATGAAAACAGAACTGAATTGAGATGCACACACAGTAAACAACAAAAATAGTGAACAAATGAAGATAAACAGAAAATAGATGCACACAATATGCACAGAACACAACAAATAAAAAAAAAAGCAATTTGGAAGCTTTTTTTTAAATTAGAAACAGTTACATATGCAATGTAACATAGAAATAAAAAAAAATGCAATTACTATTTTTTTAATAACATAGTGAACAAAAACCAAAGAACACAAAGAACAAAAACAAGTGAATACAAGATGAAGAGAGCAATTGATAGAGTTTGTAAAACAGAGAATGAGGTTCTAAGTGAAATAATAATAAGAAAATGCACAGTGAAAAATGCACATAACAAAGACTAGATAACACTAAACTGAAAATAGAAATGCCCAACTGAAATCAATACATGCCATATAATTATACTTAACAAAAGTGTGTGGTCTTCCAATACATCTTGTAGTTCGATGCAAACAGAAATCCTAACTCTATTTTGCTTTGAGCATAGGAGGTTCTTCCAATGTAAGTTCAACATTCTTGTTGCTACATGAGTTTGTTATGCATGATCGCCTAAAGTTATCCAGAGTAAACTGGATGTATATTATCATTGACGAAGCCCAAAGGATGAAGGAAAGGAAATCAGTTTTGGCATGTGATCTTGATAGATACAAATGCCAAAGGCGTCTTCTTCTAACTGGGACTCCGTTACAGGTATATTCTGTCTCATTAACCATTTAAGTTATTATTCCCAAGCAGTTGCTGCATATATTATCTATATCAATTCCTTTAGCTGGTTGAGAAGAAACTTTCAGTCTTCTTTCTTTTCGTAGATGTTTATTTATTTATTATCTATTAACTGTTATTGTTGTTGTTGTTGTTGTAGCAATCAACCTTAATAATCCACACTTGCGAACAAGGCCATACTATGCTCAACTTAGTTATCTTTGTTAGATGGGTCTATTTAAGTTACTAATGTCTATTTCTTAAAAGACCGACGTCATTTGAATGGAGGTTTATATTCCGAACTCACATGTTATATATTTGATGTGGGATTGTGTTTTCTACATGGACATCATATGGGCATCTAACATGTCCCATTAGATATGCCAAAAAATTGTAGAGTAACTGGCATTGTCTTTTATGTAACATATTAAATTTGTACTGATTCAAGTCTTCAAATAGAATTTTTAAATTGTGAATACGGACTCAAAATTGGTTCTTGTTGCCAGGAAAACATCTGCATCTGGAATAGCAGCAGAATTTGGAATCCCGCTAACTCACAAAGGGGTTGTAAGTAGGTACCGTTGTTGACCATTATGTTTTTTTCGATGGAGGAGTGGTCCTCAATAAAGGAGAGCTTTAATCTATCTCACATACACAAATAATAATAATGTGAGGCATAGAAAGACTATCAACTTAATAATGGTTTTAGTAATCTAGATGCACAACAATATAATTTCTTGATGGTATTAAAAATACTGCAAAATACATTGCAGGAAGACCATGGAGTCTAGTCACAGGGAAGGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020574591.1	5.5e-17	ATP-dependent helicase BRM-like isoform X2
Swissprot	Q6EVK6.1	2.6e-19	Protein CHROMATIN REMODELING 2
trEMBL	A0A835U833	3.0e-17	WW domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G46020.1	70.97	1e-22	101	ATBRM;BRM;CHA2;CHR2	transcription regulatory protein SNF2, putative

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g504289	AT2G46020.1	62	18	0	15	76	1083	1144	70.97	1e-22	101
g504289	AT2G46020.2	62	18	0	15	76	1084	1145	70.97	1e-22	101
g504289	AT2G28290.3	66	31	1	13	76	855	920	50.00	1e-12	68.2

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00176.20	SNF2_N	Family	24	75	43.0	2.1e-11

Gene Ontology

Accession	Ontology	Name
GO:0051276	P	chromosome organization
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003682	F	chromatin binding
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006325	P	chromatin organization
GO:0006338	P	chromatin remodeling
GO:0006996	P	organelle organization
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010468	P	regulation of gene expression
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0016043	P	cellular component organization
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0032502	P	developmental process
GO:0040029	P	regulation of gene expression, epigenetic
GO:0043044	P	ATP-dependent chromatin remodeling
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048583	P	regulation of response to stimulus
GO:0048584	P	positive regulation of response to stimulus
GO:0048856	P	anatomical structure development
GO:0048859	P	formation of anatomical boundary
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060147	P	regulation of posttranscriptional gene silencing
GO:0060255	P	regulation of macromolecule metabolic process
GO:0060964	P	regulation of gene silencing by miRNA
GO:0060966	P	regulation of gene silencing by RNA
GO:0060968	P	regulation of gene silencing
GO:0065007	P	biological regulation
GO:0070920	P	regulation of production of small RNA involved in gene silencing by RNA
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0080134	P	regulation of response to stress
GO:0080135	P	regulation of cellular response to stress
GO:0097159	F	organic cyclic compound binding
GO:1900034	P	regulation of cellular response to heat
GO:1900036	P	positive regulation of cellular response to heat
GO:1901363	F	heterocyclic compound binding
GO:1903798	P	regulation of production of miRNAs involved in gene silencing by miRNA
GO:0090691

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11647	SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4	EC:3.6.4.-	Thermogenesis	ko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network