result

Gene information

Detail information of g5053

Location

Gene	Chr	Start	End	Strand
g5053	CHR3	229085888	229086728	-

Sequences

CDS

Protein

Gene

>g5053.t1
ATGGAAAATCAACATAGAATCTCATACCAACCTTCAATTGATAATATGGTCCAAATGGATATTGGAGATGATCCATATAGTTTGTCAGCTCTATTAAGTCTTGACAATTATCCAGAGCTATACAGTCCTTATGGCTACTCTACTTCCCCTTTCAATTTTTCAGACATCAGTACGTTAGAGTGCATCACTCAGTCCCAAAATAAAAACAATTTTGATGAAACAGTAAGAACTTACAGTGCCTCAGTTCCAAAATCCATGCCATGCATATCACTTGCTGAAAAGATGCTTAGAGCTCTATCATATTTCAAAGAAACTTCTGGTACTGGAATTTTAGCTCAAGTCTGGATGCCAGTTAACAATGGAAACGGTTACGTGTTAAGCACGTGTGAACAACCGTTCCTTTTGGATCAAATTCTTGCTGGGTATAGAGAGATTTCAAGGGGGTTCACGTTTTCTGCAGAAGAAACTCCTGGTTCGTTTCCTGGGCTACCGGGTCGAGTTTTCATATCCGGGTTGCCTGAATGGACTTCGAACGTTGTTTATTACAGCAAGTGTGAGTATTTGAGAGCGGATTATGCTAACAGTCATGAAGTTCGTGGGTCGCTTGCAGTTCCCATTTTCGACCCTAAAGAGAAATCTTGTTGTGCTGTTCTTGAACTTGTTACGACCAAAGAAAAACCCGATTTTAATTTGGAGATGGAAAGTGTTTGCAATGCTTTGCAGGTATAACTTTTTTTATTTTAACGTATGAGTATGAAATTCTGATTGTTGATGAACATACTTTCATATGCTCAACCTTCGTCAGACTTCTTAATTCTTATTATAAACAAAATTGTTTAAATTCCTATCTAATATATTTTGAAGTTTGAACTCGACTAAAATCAAATGCAAGATTTTTGTCCACCTGGACGATTCACTGTATTACACTATTACTGCTATTTTTAACTGCAATGCATCATCATCATTCATTAGCATACATCCTGTATGTGTCATTTTGTCTTCGTCGTCATGCATCATGGATGTAAATCATGCATCGTCAGCCTACTATGGATCCTACATTATTTTATGTCATTTGTAAAATTAAGTTACTTATTCATGTCATCATGTAAACGAATTAGCTGGACAAAAACCAGAACAAACTATTTTGAACATTTTTCGTTCCTTTGTTCCAAGTAATTGATCTGCAGTCATTGAAATAAAAAGGTAGAAAATTCAGTTAGTTAAGTTGCACTTTAAAATTTTTATTCTACTTATTCATGCACTAGCATTCAACGAATTCCAAACTTGTCATCTAAGGGTGGAAAATCTCATTTATAGAAACCTCAGGCAGACCCTTCAAACGTTTAAAAGAATTCAACTACATAAAAAGTTGTTTTGATTGTATTCTAAACTTCCCGACAGTCTTTAGTTGTAAAGAGAATTCTAACTATTTTTAGAAACATAATTATATCTACTCATGCATACGCTCAGATTATGATTACGAACTTTTGATAGAAACTATAGTTGCTCATGCTTACATTTAGTTGTAAAGAGAATTCTAACTGTATACACCCTTTTATTTACATTTATATATGTTAATTATTGATAGTTATATTCCAACTTTTATGCAAATAGCGAGTGATTATGCACTCCGGTTTTTCTTTTGCCTACAACAAATACCGTGCATACCACTTGCTAGGAAAATATAAATGTTTTGACAGATTAATCCTTTTCTGTATGTCCTTAATAAATCATAGCATCACTTTCTAGATACATCTACTACCTAGAACTAAATTGGTTGTTTGATTTGTATGCATGTAGGCTGTGGATTTGAAGACTGCCAAAGTCCAAGCTTGTCAACAGGTGCCAACCAATTTCTGTTACATTTTTACTTGATATATTCATTATTGCTACTTCAAATTCCAAACTATATCATTACTTTCTCAATTGTAACAAATACAGTTAGATCATTATGCAGAACTTAACCGACAACCAAAAATCTGCATTCAGCGAAATACTAGACGTTCTTCGAGCTTGCTGCCATGCACACACTCTACCTTTAGCCCTTACATGGGCCCCATGCTCCTCCGATTCAAACTCTGACTTCAAGAACAAATCTTTGTGCATTCAAGAATCAGCATGCTACGTACTCGATCCAAAAATGAAAGGCTTCCTACATGCATGCACGAGCACCAGCTTGAAAAAGGGCAAGCCATAGCTGGAAAAGCACTTAAATCAAACCATCCCTTCTTCTCTCCTGACGTAAAAGGGTACAATATAAGAGAATATCCGTTAGCCACCATGCCCGAAAGTACAATCTGAATGCAGCAGTTGCTATTAGGCTGAGAAGCACTTTTACTGGGAACGATGATTATATATTGGAGTTCTTTTTACCGATTAGTTGTAGAGGGAGTTTGGAGCAGCAGGATTTGTTGAATAGTTTGTCCATTACGATGCAGAGGATTTGTAAGAGTTTGAGAACTGTTTCGGAGGCTGAGGCAGTTTCGACCAATTCGATGAAGTCAGTTGTGACTAACAGTGATAATGAGACGATGACTAATTTTCCCTTTGAGGATTCAAGAGCAACTTCTAGTGGAGCTAAGGTATTTAGACATATGCTTTGATATTCTTTTGAGCATGGTTATTATATATATGATTAGAAAAATCCTATTCAAGACCTTTGGTCACACAAACAACTATTTTAACACTCGTATCAGTGATCATTGGTCGGTTTAATATTCATTATAGGAAGCGTATTATTTTTAATGAATACGTGTGGCCTCTAAGGGATGACTCGTCTAATCAAAACATTAAGATGTTAATTAAAGATGTAAATGTAGAAATACCCCAAAAAAAAGTGATGAAGGGAAGTGTTATAATATAAATAATTGCCTCGATAATCTTGGATCACTCAAATTTCAGTTTGAATCTGTAAGTATGATGCTAGTTGTTTGTGGTATAACACAATTTTAGACAACTCTACTATCACAATGCTAGCAGAATTAACTATAATAGTGAAGTATTTGCTTGACTGGAGAAAGGATTCCTGGTGCTATGAGATGTTAATGCAAACATATTTAATATTTTGATTTTTGTTTCTGCGTATACTTTGAATGGGATTATGTGATATGCTCATGCATGATTTTCAACATTTGTATCATTGATTTCAGTTTAAGCCAAGACAACATGACAAAAAAAGAAGTACAGCTGAGAAGAACATAAGCTTAAGTGTGCTGCAGCAATATTTTTCTGGAAGTCTCAAAAATGCTGCTAAGAGTATTGGTGGTTAGTTTTTTTTAGTCATCATCTGTCATAATTTCTATTGGTAGCATGTCTACTAAGATCAATGTTTCATAAATGCAGAACAACAATAACTTGAATCATTTAATATTAATCGCAAGAACATAGGCTTAAGATGAATGTTTTGTCGCTAAATATCTAGAGTTTTGTAGAATGTTATTTCCATTGTTCAAATTTTTAGTTTGGAAGGATGTGACAGTGGTATGCCCATCAATGCCAACCTGAAATTTGTTTTTACTTTATATAAAATGAATTAAATTCATATTCCCCTAAAACCGCAAGGAATTTTGTTTCATTTGTTTGAATTTTTCATAACCAATTGTCTCATGATGTTCTTTATGCAGTATGCCCTACCACTCTCAAACGAATATGCAGACAACATGGCATTACGAGATGGCCTTCTCGCAAAATAAAAAAAGTCAACCGCTCTCTCGAAAAATTACAAACTGTCATAAACTCCGTACAAGGAGTAGATGGAGCATTGAAGTATGACCCAACCACTGGCTGTATTGTAGCCTCGGTCTCAGCAGAAAAGTCAACCACCACAACACTAGACACAGCAAATCAAGATGACACATTAAGGCCTCAGTTCTCGACACCTGACATTGAAACTGAAGAAATATTTCAACAAAAAATGGACTTCGATGACAATTCACTTGGCATATCATCTATAATGAACTTAGGCTCAATAGAAACAAATGATAACTTATTAAAGAGAGAATGCAGTCATCCTTCTTCTTCAAGCATGACCGATTCATCAAGTGGCAGTGCTTCGAGCTTCTCTACTTTCACTAAAAGCTCTAAAGAAAAATCGTTAATGTCAGATGTGGATAACGGGCATAATATCACAGTTAAAGCCACTTATAAAGGGGATACAGTGAGGTTCAAGTTCGAACGATCTATGGGTTGCCATGAACTATTTGAACAAATTGGAAAAAGATACAAGCTTTCTATGGGCACTTTTCAAGTGAAATACATGGACGATGAATATGAATGGGTGATGCTATCGAACGATTCTGACTGGTTTGAATGCATTGATGTTTTGGAGTCAAGTGGTTCAAAGAATTTGAAGCTTCAAGTGCGAGACACGGTCTGTAGTTTTGGTAGCTCTGGAGGTAGTAATAATTACCTGCAGGCATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245889.1	3.3e-241	LOW QUALITY PROTEIN: protein NLP2
Swissprot	Q0JC27.2	4.1e-180	Nodule inception protein-like protein 2
trEMBL	A0A5P1FI09	1.6e-221	NIN-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G43500.1	45.41	1e-173	607	NLP8	Plant regulator RWP-RK family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g5053	AT2G43500.2	795	287	16	81	733	154	943	45.41	1e-173	607
g5053	AT2G43500.1	795	287	16	81	733	154	943	45.41	1e-173	607
g5053	AT3G59580.2	552	181	11	81	552	97	641	51.45	2e-146	516

Ortholog group

Species	Genes
Allium cepa	g5053.t1
Allium fistulosum	AfisC6G02192
Allium sativum	Asa8G04496.1
Arabidopsis thaliana	AT2G43500.1; AT2G43500.2; AT3G59580.1; AT3G59580.2
Oryza sativa	LOC_Os04g41850.1; LOC_Os11g16290.1; LOC_Os11g16290.2; LOC_Os11g16290.3; LOC_Os11g16290.4; LOC_Os11g16290.5

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02042.12	RWP-RK	Family	448	496	88.6	1.6e-25
PF00564.21	PB1	Domain	638	718	58.3	4.9e-16

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network