result

Gene information

Detail information of g505965


Location
GeneChrStartEndStrand
g505965Scaffold_88938:HRSCAF_472024788730800153-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008807276.10.0e+00probable ATP-dependent DNA helicase CHR12 isoform X2
SwissprotF4J9M5.10.0e+00Protein MINUSCULE 1
trEMBLA0A8B7CVX20.0e+00probable ATP-dependent DNA helicase CHR12 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G06010.178.000.0 749ATCHR12;CHR12Homeotic gene regulator

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag505965.t1; g505967.t1
Allium fistulosumAfisC5G02102
Allium sativumAsa6G05897.1
Arabidopsis thalianaAT3G06010.1; AT5G19310.1
Oryza sativaLOC_Os05g05230.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily37451297.84.6e-28
PF00271.28Helicase_CFamily53264569.23.1e-19
PF14619.3SnACDomain72580442.95e-11

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0006260PDNA replication
GO:0051276Pchromosome organization
GO:0000182FrDNA binding
GO:0005515Fprotein binding
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0000902Pcell morphogenesis
GO:0001085FRNA polymerase II transcription factor binding
GO:0001101Presponse to acid chemical
GO:0001102FRNA polymerase II activating transcription factor binding
GO:0008152Pmetabolic process
GO:0016049Pcell growth
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0003690Fdouble-stranded DNA binding
GO:0034728Pnucleosome organization
GO:0042393Fhistone binding
GO:0042623FATPase activity, coupled
GO:0003824Fcatalytic activity
GO:0017111Fnucleoside-triphosphatase activity
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0005975Pcarbohydrate metabolic process
GO:0005984Pdisaccharide metabolic process
GO:0005985Psucrose metabolic process
GO:0005987Psucrose catabolic process
GO:0006066Palcohol metabolic process
GO:0006139Pnucleobase-containing compound metabolic process
GO:0016887FATPase activity
GO:0006259PDNA metabolic process
GO:0006261PDNA-dependent DNA replication
GO:0006281PDNA repair
GO:0006302Pdouble-strand break repair
GO:0006310PDNA recombination
GO:0006325Pchromatin organization
GO:0006338Pchromatin remodeling
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0006996Porganelle organization
GO:0040007Pgrowth
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0009888Ptissue development
GO:0008094FDNA-dependent ATPase activity
GO:0008134Ftranscription factor binding
GO:0008150Pbiological_process
GO:0009056Pcatabolic process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009266Presponse to temperature stimulus
GO:0009267Pcellular response to starvation
GO:0009311Poligosaccharide metabolic process
GO:0009313Poligosaccharide catabolic process
GO:0009408Presponse to heat
GO:0009414Presponse to water deprivation
GO:0009415Presponse to water
GO:0009605Presponse to external stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009791Ppost-embryonic development
GO:0009826Punidimensional cell growth
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0009991Presponse to extracellular stimulus
GO:0010015Proot morphogenesis
GO:0010035Presponse to inorganic substance
GO:0010073Pmeristem maintenance
GO:0010074Pmaintenance of meristem identity
GO:0010078Pmaintenance of root meristem identity
GO:0010154Pfruit development
GO:0010162Pseed dormancy process
GO:0010231Pmaintenance of seed dormancy
GO:0010431Pseed maturation
GO:0010453Pregulation of cell fate commitment
GO:0010455Ppositive regulation of cell fate commitment
GO:0010468Pregulation of gene expression
GO:0010492Pmaintenance of shoot apical meristem identity
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010570Pregulation of filamentous growth
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0010810Pregulation of cell-substrate adhesion
GO:0010811Ppositive regulation of cell-substrate adhesion
GO:0016043Pcellular component organization
GO:0016052Pcarbohydrate catabolic process
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0016462Fpyrophosphatase activity
GO:0016514CSWI/SNF complex
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0016787Fhydrolase activity
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019827Pstem cell population maintenance
GO:0021700Pdevelopmental maturation
GO:0022414Preproductive process
GO:0022611Pdormancy process
GO:0022622Proot system development
GO:0033554Pcellular response to stress
GO:0030155Pregulation of cell adhesion
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031490Fchromatin DNA binding
GO:0031491Fnucleosome binding
GO:0031492Fnucleosomal DNA binding
GO:0031494Pregulation of mating type switching
GO:0031496Ppositive regulation of mating type switching
GO:0031667Presponse to nutrient levels
GO:0031668Pcellular response to extracellular stimulus
GO:0031669Pcellular response to nutrient levels
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032504Pmulticellular organism reproduction
GO:0032989Pcellular component morphogenesis
GO:0032991Cmacromolecular complex
GO:0033613Factivating transcription factor binding
GO:0034198Pcellular response to amino acid starvation
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0036003Ppositive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0040008Pregulation of growth
GO:0042148Pstrand invasion
GO:0042221Presponse to chemical
GO:0042594Presponse to starvation
GO:0042766Pnucleosome mobilization
GO:0043044PATP-dependent chromatin remodeling
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043565Fsequence-specific DNA binding
GO:0043618Pregulation of transcription from RNA polymerase II promoter in response to stress
GO:0043620Pregulation of DNA-templated transcription in response to stress
GO:0043900Pregulation of multi-organism process
GO:0043902Ppositive regulation of multi-organism process
GO:0043933Pmacromolecular complex subunit organization
GO:0044107Pcellular alcohol metabolic process
GO:0044109Pcellular alcohol catabolic process
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044248Pcellular catabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044262Pcellular carbohydrate metabolic process
GO:0044275Pcellular carbohydrate catabolic process
GO:0044281Psmall molecule metabolic process
GO:0044282Psmall molecule catabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0044877Fmacromolecular complex binding
GO:0045595Pregulation of cell differentiation
GO:0045597Ppositive regulation of cell differentiation
GO:0045785Ppositive regulation of cell adhesion
GO:0045927Ppositive regulation of growth
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0046164Palcohol catabolic process
GO:0046352Pdisaccharide catabolic process
GO:0046483Pheterocycle metabolic process
GO:0048316Pseed development
GO:0048364Proot development
GO:0048507Pmeristem development
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048589Pdevelopmental growth
GO:0048608Preproductive structure development
GO:0048609Pmulticellular organismal reproductive process
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051094Ppositive regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0060560Pdevelopmental growth involved in morphogenesis
GO:0061412Ppositive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070577Flysine-acetylated histone binding
GO:0070603CSWI/SNF superfamily-type complex
GO:0070784Pregulation of growth of unicellular organism as a thread of attached cells
GO:0070786Ppositive regulation of growth of unicellular organism as a thread of attached cells
GO:0071496Pcellular response to external stimulus
GO:0071695Panatomical structure maturation
GO:0071704Porganic substance metabolic process
GO:0071824Pprotein-DNA complex subunit organization
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090033Ppositive regulation of filamentous growth
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097437Pmaintenance of dormancy
GO:0098727Pmaintenance of cell number
GO:0099402Pplant organ development
GO:1900187Pregulation of cell adhesion involved in single-species biofilm formation
GO:1900189Ppositive regulation of cell adhesion involved in single-species biofilm formation
GO:1900190Pregulation of single-species biofilm formation
GO:1900192Ppositive regulation of single-species biofilm formation
GO:1900428Pregulation of filamentous growth of a population of unicellular organisms
GO:1900430Ppositive regulation of filamentous growth of a population of unicellular organisms
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901575Porganic substance catabolic process
GO:1901576Porganic substance biosynthetic process
GO:1901615Porganic hydroxy compound metabolic process
GO:1901616Porganic hydroxy compound catabolic process
GO:1901700Presponse to oxygen-containing compound
GO:1902494Ccatalytic complex
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1904949CATPase complex
GO:1990837Fsequence-specific double-stranded DNA binding
GO:1990928Presponse to amino acid starvation
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000217Pregulation of invasive growth in response to glucose limitation
GO:2000219Ppositive regulation of invasive growth in response to glucose limitation
GO:2000241Pregulation of reproductive process
GO:2000243Ppositive regulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140030
GO:0140033
GO:1905392

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11647SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4EC:3.6.4.- Thermogenesisko04714

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.