result

Gene information

Detail information of g506797

Location

Gene	Chr	Start	End	Strand
g506797	Scaffold_89006:HRSCAF_472092	227278	229964	-

Sequences

CDS

Protein

Gene

>g506797.t1
ATGGAAGGAGGAAACATTGGGACGGTTTATTTAATTAGATTAGACATGAATAGAGAGGTTAGAGAACCCAACGACAAAAAGTTCTAATAGGCAAGATATAAACAGTAATTACAATTATTATGCAAAATGAAACTCTTAATAAATAAATAAAATGAAGAAAGAAAATCACTGAACTTAATGAAAGTAGCACCTAACTTGATTAATGACTGTATCAACACGAGTACCAATTCAAAAAGTGTAGGCAGAAACATAAAAGTTATATCCCTACAATATTAATTATCATGTATCATACTTTACATATCTCAACGAAATAAACAAAGGGAAAAAATCAAAAAAGGGAGAGAAAGAAGGTACTGCACTCAAAGTTAATTGCTAACAGCAACACAACCTACCATATTAGTGACTAATAATCAACAACTTTAGCGATATAATTAAGTTATCACCAACATTTTCAGTCCCCACATTAACAAAACTCGATTTATATATAAACACAGACACAAAATAAAATCTCTCATCATCCAATACATACATACATACATAATCAGAATAACACAGAAATGATGCAAGCAGAGGTAGATGAGCAGTTGAGAATGGTGAAGGCAGAGATGTTAGTTCATCCATTATGGAACCAATTGCTAGGAGCACACGTGTCATGTCTACGTGTAGCCACACCTGTTGATCATCTTCCTGTTATAGAGGCACAGCTTGCAAATTCTCATCATGTCCTCGAGTCTTATGTATCGGGCTGCCGGGCTTTTATGTCTCACCAGGACAAGCAAGAGCTTGATGTTTTTCTTGTTAGTATACATCTAAACCTTTTTTTTCTTCTTCTATAACACAAGGATCTATATCATTTAGACTATGGGGCTTATGATATATAATTCTTATCCAAAGTACATATTTTATGCTACCATTTCCGAACTCCTCTAATTATTAATATTATTAGTAAAGAGAAACGAAAAGAAATAAATTTGCTTCAACAAACAAACAGTCTTATCAACATTATGAGCAGTCAAGAGTAGAAGTATTTGGACTAATGTGAAGTGCAAATTGTGCAGGCACAGTATTTGGTAGTTTTGAGTTCGTTCAGGGAGCAGTTGCAGCAGCATGTGGGCGTCCATGCCATGGAAGCTGTAATGGCTTGTAGAGATATTGAGCAGTCATTGCAGGAACTTACTGGTATTACTTTATTTTATCAGAAACTACTCAAGTACACAACCAACTGTTTTACTGGTGTTTAATGATGGTTGGTATCCTTTCAGTTTTAATCTATTTTGAATTGGTGTTGTGTAATCTTTAAACTAAACAATTGTACATAATTTAAAGATTATCTACCAGCTTTTAAATATACTTTTTTTTTCTAATATTGAAACTGGTTGCTGTTGAGGGAAGATGAGATGTTATAATTTATCCATGTTAGGTGCAAGATGTAGGTTAAGTTTTCTATTTATTTTCTTCATTTGACACGTTTTTATGCATAGATACAAAATTCTGGCAGTCTCAAAAGATTACTCATTTCCAGATAAACCTATTTGCTAATAATTTTTTTTGTGATATGCATTTTGAAACCCTTCAAATGGTTTCCTGTTAATACACTCACTATACGTAGAAAAGCTTGTAAAAGGACTATTGTTATGGTTTTCAGGAGCAAGGCTGGATGAAGGAACAGGAGCAACTATGTCCGAGGACGAGGATGAACCGCTTCACACCGAAATGCACAACATCGATGCTTCAGGTTTTGACCCCAGAAACAATTTCGACGTGATGGGCTTTGGGCCTCTGGTTCCCACTGAGTCTGAACGCTCCTTAATGGACAGAGTCAGACAAGAACTGAAACTCGAACTAAAACAGGTTACTACAATTTCTCATACATTGCTAACTTGTCAATGAACTATCCATGTTACCCTTAAAAATTGTTCCACATATAACAGTTAACATAATGAATCTTACGTAGCTATTACATGATAATAACTGGTGGTATAATGGACAGATAAGATCATCAAAAAGTCTGAACAATCAAATGTGCCATTTTTCAGAGTCAATAGATCTAACGGTAGCCATTGTGACGTCTAATAGTGGAAACCTATGTAAATTTTATAGTTTGACACAGATTCTGATTACTCATAGAAATGTTTGCTGACAAATTATTTGAACTACAGGGTTTTAGGTCACGAATAGAAGATGTAAGAGAAGAGATATTAAGAAAGAGGCGAGCGGGGAAGTTGCCTGGGGACACAACGTCTGTTTTGAAGCAGTGGTGGCAACAACATTCCAAATGGCCGTACCCAACTGTAACTGTTTTATATCGTTTTCAAATGCACATTACTCAATTAATATATGAAAGAGAAAACAGAATTTTATGTCAGTGACACAGATAATTCTTTGCATTATTTCATAGAAATAACCAAAGTAATCTTAATGGGGGTAAATCCAGAATTAATCCAAGTAGTAACTGAGTAGCAATATTTGTTAATTGATCGCAAACAATATTTTATATATAAATTTGCAACGTATGTACTTAAGACTAAATACTGTGTTGTAAAATGCAGGAAGATGATAAAGCTAGGCTAGTCGACGAGACAGGATTGCAACTGAAGCAGATAAATAATTGGTTTATAAATCAGAGGAAGCGCAACTGGCATAATAACTCTTCTCAATCAACTTCTAAGTCTAAACGAAGACGATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010933995.1	4.1e-108	homeobox protein knotted-1-like 3
Swissprot	P46606.1	8.3e-106	Homeobox protein HD1
trEMBL	A0A6I9RX58	3.0e-108	homeobox protein knotted-1-like 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G62990.1	71.01	4e-111	397	IXR11;KNAT7	KNOTTED-like homeobox of Arabidopsis thaliana 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g506797	AT1G62990.1	276	73	4	44	317	20	290	71.01	4e-111	397
g506797	AT5G11060.1	267	73	4	54	317	124	382	68.54	2e-101	365
g506797	AT5G25220.2	267	74	4	54	318	160	419	68.91	2e-101	365

Ortholog group

Species	Genes
Allium cepa	g506797.t1
Allium fistulosum	AfisC4G02474
Allium sativum	Asa4G01931.1
Arabidopsis thaliana	AT1G62990.1
Oryza sativa	LOC_Os03g03164.1; LOC_Os03g03164.2; LOC_Os03g03164.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03790.10	KNOX1	Family	53	94	46.4	2.2e-12
PF03791.10	KNOX2	Family	110	160	57.7	6.3e-16
PF05920.8	Homeobox_KN	Family	262	301	63.1	1.4e-17

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009058	P	biosynthetic process
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009987	P	cellular process
GO:0010087	P	phloem or xylem histogenesis
GO:0010089	P	xylem development
GO:0010191	P	mucilage metabolic process
GO:0010192	P	mucilage biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044087	P	regulation of cellular component biogenesis
GO:0044237	P	cellular metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903338	P	regulation of cell wall organization or biogenesis
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network