result

Gene information

Detail information of g508875

Location

Gene	Chr	Start	End	Strand
g508875	Scaffold_89196:HRSCAF_472282	60414	62857	+

Sequences

CDS

>g508875.t1
ATGTTGCAAGATATTATCGATCCAATACCTGAGCAACTCTCAATCGAAGGAATCGATTTCCCAGATGAAGAAGACATGAACTTTTTCACAGATGAAATCTCAACCGTGGGCAACACAGCCAATACTGCTAATACTGCTACTACAACTGCTACTACAGCAGCGAGCTGTGACAATGAAAGTCTATGTTGCTATCTAGATGATGATGCCTCCTTTGACTTTGACCCAGCAACCATCTCCACCTTACTGGACTCACCAGAAGTCAACCCTACAGCCTACCAACTACCTACTTCATCAGAATATACTGCCAACAATCAAAACCAGGATGAACTTAGTCAGATATTGCTTTCAGATACAGTCAACAATGGAAACTGGCCAGCACACAGTCCAGATTCAGTCATACCACCTGAAACTGATACAGATGCAAGGCCAGGGTGGGTTCCTTGGCAATGCTATACTCCAGAGCCAGTTGTTCCTATTTCAGAAAGGCCGCAAATTACGATGTTGCCCTCGATGATGGGGTATGTGGGACTAAATGGGTTGTCTACATGCTCTTTGATGGATACGGGTATAATTGGAAGATATCATCAGAGTATGAACGGTGGAGATGCAGCGATGGGGTATGTTAATGGGGGAAGGATGATGAGCGGCGAGGGAGAAATTGGAATCGAAAGCGGAGGGATGTATAGACCTGAAACATGCCAGAGGCTTTATAGTTCAATTGACATGCAGGTAATGGGAGACTACAAAAGTTTAGTTGAAGGATGCAACAGCAACTCAATGACACTTCCAACAACAGACATCACACCATTGGATGATTCAAATATTAAAGTAGGACGCCTTTCGCCCGAAGAGAGAAAAGAGAAGATACACAGGTATCTCAAGAAGAGGACAGAGAGAAATTTTAATAAGAAGATTAAGTATGCATGCCGGAAAACACTGGCTGATAGTCGACCACGAGTAAGAGGGAGATTTGCTAGAAATGATGAGCATGGAGAAGGTACAAGCAGACAAAGTTCAAGCAATCATGAGTATTATGATGAGGAAGAAGTGGTGGTGAAGGAAGAACATGACATAATGAATTCTTCGGATATATTTGCGCATATCAGCGGCGTTAATTCCTTCAATTATAACTATACCCTAGAGTCTTGGATATAG

Protein

Gene

>g508875.t1
ATGTTGCAAGATATTATCGATCCAATACCTGAGCAACTCTCAATCGTAATTTTTCTAACTCCTTAATTTGCTTTTGTTTTTCTTGATTTCATTCTCCTATTGTTTAACTCAACTCTTACTGAAACGTTCATGAGGTGCATTGTTTCATTATCAAGTATAATTTTTTTCTTTTGATTTTTTTCGTTTTTTCAATTAATTCACTTGTTGCTTGTTGCAAACATATTTAATAGTGGACATTATGAGCTCTTAAGAATTTCGATTTTTGATTATGCAGATTTATAAAAGTTTACTTATAATGCAGCAATTCATTATCTTTCTTTCAGTTATCGAGTCATTTGCTTATGTTTTACCTTAAGTCGGGTTTCAAAATGAAATAAAATTGAACTAAACATGGTCGATTATTTTGGGAATACTCCTCCTAACCAAAGCCATATCTTTTGCTTATCTACTTATCATCATCTTCTTCCCTTTAAGAAAAGTAAGTTTTGCATGCATGCATGCAAATATGCTTTCTCAATTTTTCCATATAATTCATGTCCTTTTTCACAACCTCAGTCAATGTATTTTCCTGAGCTTAGGAATCAAATGCCAAACACACATGGGTGCACAACATAAAATGTTAACTTTATGTGACACAAAGCCATATCTTTGACAAGATTGAAACATACGACAAAATCCATAGATTCTATAACATTTTCATTTTACTTCATTTCAAAGTACAGAAGTATATATATCTTTCACTTCTTTGTTTTATGCTTAATAGCATCTTGCTAAATAGTTTGATGTGGGATATATTCCTTTGCTTATCAAAGGTTTCCTGGTTTCTCCTTTAACTAACAGAAAATGCGTAACGTAATGAAAGATAAATCGTCGCTTTAAATACTTCTAAGAAAAATTTACCTTGCATTGAAACAGGAAGGAATCGATTTCCCAGATGAAGAAGACATGAACTTTTTCACAGATGAAATCTCAACCGTGGGCAACACAGCCAATACTGCTAATACTGCTACTACAACTGCTACTACAGCAGCGAGCTGTGACAATGAAAGTCTATGTTGCTATCTAGATGATGATGCCTCCTTTGACTTTGACCCAGCAACCATCTCCACCTTACTGGACTCACCAGAAGTCAACCCTACAGCCTACCAACTACCTACTTCATCAGAATATACTGCCAACAATCAAAACCAGGATGAACTTAGTCAGATATTGCTTTCAGATACAGTCAACAATGGAAACTGGCCAGCACACAGTCCAGATTCAGTCATACCACCTGAAACTGATACAGATGCAAGGCCAGGGTGGGTTCCTTGGCAATGCTATACTCCAGAGCCAGTTGTTCCTATTTCAGAAAGGCCGCAAATTACGATGTTGCCCTCGATGATGGGGTATGTGGGACTAAATGGGTTGTCTACATGCTCTTTGATGGATACGGGTATAATTGGAAGATATCATCAGAGTATGAACGGTGGAGATGCAGCGATGGGGTATGTTAATGGGGGAAGGATGATGAGCGGCGAGGGAGAAATTGGAATCGAAAGCGGAGGGATGTATAGACCTGAAACATGCCAGAGGCTTTATAGTTCAATTGACATGCAGGTATGTACATAAATAAGAATTATATTTATATTGAGACAGAAACATGAAAATTTTGCTAACCTTCGTGAAAGGATAGTCCATGAAGCATCCAATCTAGCTGAAAAAGGAACACAAAATAATAGTTTTGTTAGGGGTCAAAGAAGACAAGTAATTGAGATTGTTATTTGATTTCAAAAACCTAGTGTGCTTCTGTTTAATGCATCTTGAGTGAGAATTATTTAAAATTATTTGGAGGTAATGGGAGACTACAAAAGTTTAGTTGAAGGATGCAACAGCAACTCAATGACACTTCCAACAACAGACATCACACCATTGGATGATTCAAATATTAAAGTAGGACGCCTTTCGCCCGAAGAGAGAAAAGAGAAGATACACAGGTATCTCAAGAAGAGGACAGAGAGAAATTTTAATAAGAAGATTAAGGTTAGACTTACTTTTTATGCATGTCTATTATATTGTTATTCATTATGCAGGTTGTAAAGAGGTATCCTTACTAACTACATACAAAAATTATTGACAGTATGCATGCCGGAAAACACTGGCTGATAGTCGACCACGAGTAAGAGGGAGATTTGCTAGAAATGATGAGCATGGAGAAGGTACAAGCAGACAAAGTTCAAGCAATCATGAGTATTATGATGAGGAAGAAGTAAGTTATAACTTATATATTATAGCTAATGTTTCCAAGTGAGATGCATTTAACCATCATAATTTGAAATAATTTCACTACTGTGTAGGTGGTGGTGAAGGAAGAACATGACATAATGAATTCTTCGGATATATTTGCGCATATCAGCGGCGTTAATTCCTTCAATTATAACTATACCCTAGAGTCTTGGATATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247217.1	2.9e-92	uncharacterized protein LOC109824978
Swissprot	O82117.1	5.9e-05	Protein CONSTANS-like CO3
trEMBL	A0A5P1E4D9	2.1e-92	CCT domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G04500.1	55.17	6e-44	174		CCT motif family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g508875	AT1G04500.1	174	64	6	219	384	219	386	55.17	6e-44	174
g508875	AT2G33350.2	229	99	6	175	384	190	409	44.54	1e-42	170
g508875	AT2G33350.1	228	101	6	175	384	190	410	44.74	2e-42	169

Ortholog group

Species	Genes
Allium cepa	g508875.t1
Allium fistulosum	AfisC6G00967
Allium sativum
Arabidopsis thaliana	AT1G04500.1; AT2G33350.1; AT2G33350.2
Oryza sativa	LOC_Os03g04620.1; LOC_Os03g04620.2; LOC_Os03g04620.3; LOC_Os03g04620.4; LOC_Os10g32900.1; LOC_Os10g32900.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06203.11	CCT	Motif	285	327	66.6	1.4e-18

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009909	P	regulation of flower development
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048580	P	regulation of post-embryonic development
GO:0048831	P	regulation of shoot system development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050896	P	response to stimulus
GO:0051239	P	regulation of multicellular organismal process
GO:0065007	P	biological regulation
GO:2000026	P	regulation of multicellular organismal development
GO:2000241	P	regulation of reproductive process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network