result

Gene information

Detail information of g50954

Location

Gene	Chr	Start	End	Strand
g50954	Scaffold_29107:HRSCAF_262137	92523	94416	+

Sequences

CDS

Protein

Gene

>g50954.t1
ATGGCATTAGAGGCAGCAACATTTCTAGAAGAAACCTTCAACAGAAGTAGCAATTTTAGATGGAATGAGATGTATACCTATGATACTAGTAACTTAGTTCTTGATTTTGATGATGGTGTTAGCATGGAATTTGTGAATATGGAAGAGAATGCGATCTCAGGAAACAGGAAGGGAGACAAGGTTATTAATGTCGACAAAATGAAGAGGCGATGTGCGAGGAAGAGTTGTAAGAATAAAGAAGAGGTGGAGAATCAAAGGATGACTCATATCATGGTGGAAAGAAACAGGAGAAAGCTCATGAATGAACATCTTGCTGTGCTTCACTCGCTCATGCCACCAGAATATGTGCCAAGGGTATCTACATCGATTTACACATTTTTAACTTCAAATTAGTATCTAACTACTTCTTGAGTACAGTTTTACTCTTTATCGCATGAAGAAGATACAAGTAAGAAAATTCAGAATGGTAACCATAGGATTTAAAAAAAAAATAAAAAAATAAATAAGGAGTAAAGGATTTCATGGAATCATAATTTATGTTTCAGCATTGTTAGCTTTAGAGCTTGATCTGATTTTCCCTTTTTTTTCTTTTCTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTAACCTTTTCTCTTATAGCTTAATGTTTGTGGTCATGCAAACAGCCTCTTCAGTACAAAATATTTTTCATTCCAAATAAGAATGAAGCAAAATATTTGAATCATTCTGCTTCCTGGCTTCCTGTTCAAATATCATGAAAATATTTTTTTATGTCTGCCAAATAAATTCAAACCGTGATAGAAAACCATCAATCATAGTGACACAAGCTCCAAAAATATTACTGTAACCTCAATGTTTGTGTACCTGAAAGGGCTAGATTCTCAACAAAGCTTTCACAATATTTGCTGAATCATTCAATCCTTTCCACGTGAAATCAAATTTCATTGCACAACTGCACTAAAAGGGGTGCACTTTTGTTGCGTATACTTGTCAACTTGTAGTGATAAATTTGTTCGGTCTCCACGTAGAATATGACTCCTACATGAGAATGTTAAGTGTATTGTTTACTGTACGAGAAATCAAAAAGGAAAAAGTAAACAAAATGTAAGCTCCCTTATGTAAATTACAACTTTTCCACTAATAATACTTGTTGCATCCATAGGGTGATCAAGCATCCATTGTTGGAGGAGCAGTAAACTTTATAAAAGATCTCGAGCAACAAATTCATACTTTTGTAGCAATAAAAAGAATGAAGCAGATGCAAGAATTTTACCCATCCACGCCAATTCCTGACACATTTTCTCAACGCAAATCAGTGTGCTCTAGTAACATGAACACCACAAACATTGCAAATGCTAGCAACAGTGATGCAGTTAAAACTTTAAACAGAAAAGGATCATCGGTTGCTAATATTGACGTATCCATGGCTGATAGCCATGTTACTCTTAAGATCCTTACTCAGAAATTACCTAAGCAGTTGTATAAGATAGCAGCCAGACTTCAAAATCTTCAGTTCACAGTGCTTCATCTTACTGTTTGTACAACTGGTGATGAGATGGCTTTTTATTCATTCAGTCTCAAGGTATGCGAAAAATATTTGCCATTGGTTACATTCAAAGACCAAGTATCTTTTTTTTTTTCCCTTTTAATAATCAACTCTTTAATTATGTAGTTCAACGCTTTAAGTATGAAATTTGGTTAACTCAAACCAAACTTGACTTTCTATTCTTTTCCGACGTACTTTTTATAACAAAGTTTAACAACTAATTAGTTACTGAAATATTTGGAAATAGGTGGAAGATGATTGTCAGTTCAGATCAGCGGATGATATAACAATAGTAGTGACTCGTATGGTCGAGGAAATTGCAAAGGAGGCAGGATATAATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	KMZ71969.1	1.5e-48	basic helix-loop-helix (bHLH) DNA-binding superfamily
Swissprot	Q9SK91.2	2.4e-35	bHLH transcription factor bHLH094
trEMBL	A0A0K9PSN5	1.1e-48	Basic helix-loop-helix (BHLH) DNA-binding superfamily

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G72210.1	42.29	5e-42	167		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g50954	AT1G72210.1	227	100	5	75	289	113	320	42.29	5e-42	167
g50954	AT1G22490.1	212	108	4	76	285	104	303	42.45	1e-37	153
g50954	AT4G01460.1	213	119	2	77	289	105	310	40.85	2e-37	153

Ortholog group

Species	Genes
Allium cepa	g50954.t1
Allium fistulosum	AfisC6G05027
Allium sativum	Asa8G02201.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	85	136	38.9	5.5e-10

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K18485	MYF6, MRF4; myogenic factor 6	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network