result

Gene information

Detail information of g510388

Location

Gene	Chr	Start	End	Strand
g510388	Scaffold_89411:HRSCAF_472497	345662	347576	-

Sequences

CDS

>g510388.t1
ATGAGTTTCATTACTACCGTTAGCTTCTTATTCGTCATCGTATTTTTCGTAATAATTGCAGCTTCAAGCAATGAAAACTTCATTTTCAATGGATTCACCAACTCTAATTTAAGCCTTGATGGCTTTGCATCAATAACATCTGATGGTGTTCATGCCATAACAAATGGAACGAGTAAAACAATGGGCCATGCTTTTCTTCCATATGCTCTTAATTTCAAGTCCTGCAGAGGCAAAACACGCTCATTTTCAACCACTTTTGTGCTTGCAATAGCTGCTGAAGCATCATATATTAGTGGTCATGGCCTGGCTTTTGTTATTTCTAAAAGCACAAACTTTCCAACCGCTTTAACCGACCAGTACTTGGGACTTTTTAATGTGAAAACTAATGGCATTGTTGAAAATCATATTTTTGCTATTGAGTTTGATACACTTATGAACGCTGGCTTCCATGATATTGATGATAACCATGTTGGAATAGATGTTAACAGCTTGACCTCAATAGCTTCACATACTGCAGGTTATTATGATGATACTGGTTTGTTTACTAATCTGACTTTAAGAAGTGGGCAACCAATTATGCAAGTGTGGGTTGATTTTGATGGGAAAAGTATGCAGCTTGATGTTACTATGTCTCCTTTGGAAATGGCCAAACCTAAAAGGCCACTTGCATCTAGCATTGTCAACCTTACGAATGTCATCACAAATTCTACCATGCATATTGGTTTTTCTTCAACTACGGGTTCCTTTCGCTCCCATCACTTTGTTTCTGGATGGAGTTTTAAAATGAATGAGCTTCTTGTTTGGTTGTTGTTGATTTTTCTTGCATCTGCACTACTAATGCAAAGAAGATTGAAATATGCTGAGTTAAACGAGGATTGGGAGCTTGAATTTAGGCCTAATAAATTTTCGTACAAAGATTTATTCCAAGCAACAAAAGGGTTTAACGAAAAAGATCTATTAGGCATCGGAGGTTTTGGCAGAGTTTACAGAGGTGTTTTGCCAAAATCAGGCATAGAAGTTGAGGTGAAGAAAGTATCGTACGAATCAACAAACGGCATGAAGCAGTTTGTTGCTGAAATCGTCAGCATCGGTCAGCTATCTCACCGTAACCTCGTTCAACTTTTTGGCTACTGTAGGAGAAAAGGAGAACTGCTTTTAGTCTATGATTTCATGCCCAATGGCAGCCTCGATAGATTCTTATATGATCAATCAAAACCAAGTCTAAACTGGGCACAACGATTTCATATTATTAAAGGAGTGGCAGCTGGTCTTTTATACTTGCATGAAGGCTGGGAGCAAGTTGTAATACACAGAGATATTAAAGCAGGCAATGTTTTGTTAGATAAAGAAATGAATGGGAAGCTTGGAGATTTCGGGTTAGCAAAATTATATGACCATGGTGCTGATTTGCAAACAACTCATGTTGTTGGAACTCTGGGCTATCTTGCACCTGAACTTGTAGAAAATGGAATGGCAACTGCTGCAACTGATACATATGCTTTTGGTGTCTTTCTTCTTGAAGTGGCTTGCGGAAGGAGGCCTAACCGTACTGTACATGGAGAAAATATAGTGCTAATGGACTGGGTGTTAGAAAATTATCAAAGAGGGCAGCTTTCCAAAACGTTCGACCCAAGATTGCAAGACAAGGACTGCGAGTACGAAGTTGAGTCGGTTTTGAAGATTGGGCTGTTATGTTTAAACCATATCCCTCAAGCTAGGCCTACTATGCGACAAGTGGTGCAGTTTCTCTCGGGTGGTGCAACTCTTCCTGAATTACCACTAAACTATATACATGAACTTGGATACACTGTCACCATTTGA

Protein

Gene

>g510388.t1
ATGAGTTTCATTACTACCGTTAGCTTCTTATTCGTCATCGTATTTTTCGTAATAATTGCAGCTTCAAGCAATGAAAACTTCATTTTCAATGGATTCACCAACTCTAATTTAAGCCTTGATGGCTTTGCATCAATAACATCTGATGGTGTTCATGCCATAACAAATGGAACGAGTAAAACAATGGGCCATGCTTTTCTTCCATATGCTCTTAATTTCAAGTCCTGCAGAGGCAAAACACGCTCATTTTCAACCACTTTTGTGCTTGCAATAGCTGCTGAAGCATCATATATTAGTGGTCATGGCCTGGCTTTTGTTATTTCTAAAAGCACAAACTTTCCAACCGCTTTAACCGACCAGTACTTGGGACTTTTTAATGTGAAAACTAATGGCATTGTTGAAAATCATATTTTTGCTATTGAGTTTGATACACTTATGAACGCTGGCTTCCATGATATTGATGATAACCATGTTGGAATAGATGTTAACAGCTTGACCTCAATAGCTTCACATACTGCAGGTTATTATGATGATACTGGTTTGTTTACTAATCTGACTTTAAGAAGTGGGCAACCAATTATGCAAGTGTGGGTTGATTTTGATGGGAAAAGTATGCAGCTTGATGTTACTATGTCTCCTTTGGAAATGGCCAAACCTAAAAGGCCACTTGCATCTAGCATTGTCAACCTTACGAATGTCATCACAAATTCTACCATGCATATTGGTTTTTCTTCAACTACGGGTTCCTTTCGCTCCCATCACTTTGTTTCTGGATGGAGTTTTAAAATGAATGGTGTGGCGGATGCACTCGACTGCACAAAACTTCCTTCAATTCCTAGAATTGGACCAAAAAGAAACAAACATGTTCTGCTTATATTACTTCCTAGAGCTTCTTGTTTGGTTGTTGTTGATTTTTCTTGCATCTGCACTACTAATGCAAAGAAGATTGAAATATGCTGAGTTAAACGAGGATTGGGAGCTTGAATTTAGGCCTAATAAATTTTCGTACAAAGATTTATTCCAAGCAACAAAAGGGTTTAACGAAAAAGATCTATTAGGCATCGGAGGTTTTGGCAGAGTTTACAGAGGTGTTTTGCCAAAATCAGGCATAGAAGTTGAGGTGAAGAAAGTATCGTACGAATCAACAAACGGCATGAAGCAGTTTGTTGCTGAAATCGTCAGCATCGGTCAGCTATCTCACCGTAACCTCGTTCAACTTTTTGGCTACTGTAGGAGAAAAGGAGAACTGCTTTTAGTCTATGATTTCATGCCCAATGGCAGCCTCGATAGATTCTTATATGATCAATCAAAACCAAGTCTAAACTGGGCACAACGATTTCATATTATTAAAGGAGTGGCAGCTGGTCTTTTATACTTGCATGAAGGCTGGGAGCAAGTTGTAATACACAGAGATATTAAAGCAGGCAATGTTTTGTTAGATAAAGAAATGAATGGGAAGCTTGGAGATTTCGGGTTAGCAAAATTATATGACCATGGTGCTGATTTGCAAACAACTCATGTTGTTGGAACTCTGGGCTATCTTGCACCTGAACTTGTAGAAAATGGAATGGCAACTGCTGCAACTGATACATATGCTTTTGGTGTCTTTCTTCTTGAAGTGGCTTGCGGAAGGAGGCCTAACCGTACTGTACATGGAGAAAATATAGTGCTAATGGACTGGGTGTTAGAAAATTATCAAAGAGGGCAGCTTTCCAAAACGTTCGACCCAAGATTGCAAGACAAGGACTGCGAGTACGAAGTTGAGTCGGTTTTGAAGATTGGGCTGTTATGTTTAAACCATATCCCTCAAGCTAGGCCTACTATGCGACAAGTGGTGCAGTTTCTCTCGGGTGGTGCAACTCTTCCTGAATTACCACTAAACTATATACATGAACTTGGATACACTGTCACCATTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256322.1	1.1e-205	L-type lectin-domain containing receptor kinase IV.1-like
Swissprot	Q7XUN6.2	1.4e-189	Protein SALT INTOLERANCE 2
trEMBL	A0A8B8J9J8	1.4e-204	L-type lectin-domain containing receptor kinase SIT2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G53810.1	51.77	4e-179	625	LecRK-IV.2	Concanavalin A-like lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g510388	AT3G53810.1	620	254	10	17	595	17	632	51.77	4e-179	625
g510388	AT2G37710.1	614	255	8	20	595	20	631	51.95	1e-177	619
g510388	AT4G02420.1	638	268	10	1	595	1	634	50.63	2e-173	605

Ortholog group

Species	Genes
Allium cepa	g106467.t1; g106468.t1; g106470.t1; g106476.t1; g191617.t1; g224385.t1; g275048.t1; g319721.t1; g381392.t1; g418238.t1; g418239.t1; g510386.t1; g510388.t1; g510393.t1; g529683.t1; g529692.t1; g96526.t1
Allium fistulosum	AfisC1G02402; AfisC1G02407; AfisC1G05247; AfisC2G09471; AfisC3G07176; AfisC7G01324; AfisC7G01327; AfisC7G01328; AfisC7G01329; AfisC7G01330; AfisC7G01910; AfisC7G05829; AfisC7G05837; AfisC7G05843; AfisC7G05851; AfisC7G05859; AfisC7G05861; AfisC8G03404
Allium sativum	Asa0G02289.1; Asa0G05071.1; Asa2G05950.1; Asa2G05955.1; Asa2G05958.1; Asa2G05959.1; Asa2G05966.1; Asa2G05967.1; Asa3G00476.1; Asa3G00477.1; Asa3G00478.1; Asa3G00480.1; Asa7G00161.1; Asa7G00177.1; Asa7G01880.1; Asa7G01888.1; Asa7G07561.1
Arabidopsis thaliana
Oryza sativa	LOC_Os04g44900.1; LOC_Os04g44910.1; LOC_Os07g03890.1; LOC_Os07g03900.1; LOC_Os07g04110.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00139.16	Lectin_legB	Domain	25	264	237.9	1.1e-70
PF00069.22	Pkinase	Domain	315	581	161.1	3e-47

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network