result

Gene information

Detail information of g512225

Location

Gene	Chr	Start	End	Strand
g512225	Scaffold_89609:HRSCAF_472695	230865	237883	-

Sequences

CDS

Protein

Gene

>g512225.t1
ATGGAAATCAACCGTCGTGTCGATGGACCAGCGACTGTGGCGCCGTGCCAAAGAAAAGGGCAAAAGCGTAAACTTCATCAAGAACATTCGTCGTCGGCCGTCGCCGTGGGCATGGACGTGGATGCTGACGTCGCTCATCTGACCTTCGTCGAAAATTTGAAATCTCAGGTGGAAATTCTGGAATCCAATTTTTCATGGCGAGAGCAGGATCGCGTAGCCGCGAGGCGTGCTGCACACGTGCTTGCTGAGCTGGCCAAGAATGGTAATATTGCTATAGATCTAATGCTTTCTTTGAAATTGACTGCTCAGTTGTTCTGATTGAATAATTCAGAAATTATTTTGATTTTCTTTTTTGCGGCATTAGAGGATGTGGTAGGATCAATAGTAGAGGCGGGAGCGGTGGCGGTGCTGGTGAAGCATCTAGACGAGCCTCCGGCGGCTGAAGGGGGTGAGAGATGTATAGAATTTGAAGTGGAAAAGGAGTGCGCTTTTGCTTTGGGTCTTCTAGCTGTTAAGGTATATTTTTGTTCGACGTATTTAATTTGATGTATGATGGATGCTGATGTAGCGTAGAAAATATATTTGGCACGACGCATGCTATATGTTCGAGAGATATATTACGTATTTTTGCAGTTGCTGTTTGCGTGGAGCTGTTTTATTTGATAATCAACTTTGTCTAGGAGTACCATTATGCAGATAAACACCCTCTTCATTGATTATTCAGTTTCACAATTAATAGACGCAATCTATTTGTGCTGTGATTCAACAATTTGCTTTTATTTAAAAATACTGGAAAATTACAACACTGGTCAGCATCGCTATCTATTTTAGGTGTGAAAAGACAATTGAATGGTGTACTTTATTTGTGCTTCAATTTGCAACTGCTTATCAGATTCTCAGGAAAAGTGCTCCTATATGTTCCTGTAGTTTTGATATGCGTAAACTAATTTTTTTGCTTTTTAGTAAAATCATTATTCATATTGGCTACATTGATCGTTAGTTGAAGCTCATTCCGAGTGCTTGAACATTTTCAGTCTATCAATTTACATGATATAAGTCCAATGATTGTGCAAATATTATACTGTAATTTCAGTTGGATCAGTTTATAATAAACAATATCTTCATATAAACATCGTTATAGCATGTCAGACTGCTTATGCTGAACTAAACTGGCCTCTAAATATTTCTCAAGTCTCTTCTACTTTTGTTAGCGGTCATTTTTCTGTCAATTTGTTTTCTTATTATTTGCTGGAATCATATAAACAGCCCGAACACCAACAGCTCATAGTTGATGAAGGTGCTTTGACACTACTTATCAATCTTCTTAAAAGGCATAAAACTACTCCAAATTCTCGAGCATTTATTGCCTTATTAAGGAAATCTGCTGATGCATTGACCAACCTAGCTCATGAGAATAGCAGCATCAAAACCTACATCAGGTTTACTTTTTTACTTTAATTATTCATTTCTCTAATAGAAGTTTGATAATCAATTAATCAAATGCGATCATGTTGCTAATATTCTCAACTTGTATTTTTCAGGATGGAAGGTGGAATTCCACCTCTTGTTGAATTGCTTGAGCATGCAGACCCTAAGGTTCAAAAGTCAGCTGCTTGTTCCTTGCAGACCCTTGCATTTAAAAACGATGAAAACAAGAATCAAGTGAGTAGCACTTTAAGTTATTATCATTGCACTTCATTGAAGTTCACATTTCTGCTGCAAGAATCATTTGCATAATAATCGCTATTTTCAGATTATTGAGTGTAATGCCCTCCCAACTCTGATTCTCATGCTAAGGTCTGAGGATCCTTCCACTCATTATGAGGCTGTAAGTTGTACCACTTAATTTTTATGCTCTTTTTTAAAATTCTTATCATAACATTACGGATGGAATGTAAAGTAAAGTTAAGTTGGCTTTTATCTTCATTGTTTTTTATGCTGAACAGTCTAGATTGAAACATTGACTGTGCTGATGTGAACTAAGATCATCCCTGAACTCTAGTGGAAGTTTATACTTATACAGTACATTATTAGTTTTGGGTAATTTGGTTAATTGTTAAACTTAATAACTTATAAAGGTATGACTTCTTGCATTATAGTGTACTATGATTGATTCTAATAGAATGTGATGTGATCAACCGTGTTGGTTCCTCAGCTAAATTTTGCCAAAAGTTTAACGTGGCTATAATATATGTCTAGGATTATAACTTATGTTTGAAAGGTTGAACCCAATATATTTGGTTGTACAGCTAAATATGTGAGTGTTTTTTGTTTTGTTTAATAAGCTTTGCTACTATGTGTGTTTAGGGCATTTAATTCAAGGTTTTTTGCTGCACATTCAAGAGTTTCCCCATGACTAACAGTTGGGATTGGCAGTATTTATCTAAGTTGTTTTAATAATGAGCCAACTAGTTTATTTTTACAACTTTGAGCAACTTTTATCCACAATTCATGTCTGGGAGTTTTGTTATGCTGCAAACGTGTAAAGGATCAACGATGAGTGTTATTTTAACATATCTAAAATAGTGTATGCACACTGGTAAATAATATACGTATCTTTGGAAAAGGAAGTGCAATGTATTTTTCGTACCATGTTTCAGTAATAAAAGTGCATTATCATTAATTATATACCTTAGAATATATCAAGTACTAGAAAATGTAACATTTAAAGCATTTAGATGCAAATTCAAATAGCTTATAATATAGAGGGAAAAACTACTTGCACTAAAGAGTAAAGTGACTGAAGAAACTGATTGGCTGCTTTTTATTAATTCTGTTTATTCACTAAATAGTAGAAGGATCCCACATCTTCATTTTCCAATCACAGTGCATGTATCCACAGGTGTTTTCTTGCGCGAGTGTTTTTAGAATGATTAATGCATAAACATGTAAACAAAAATGTTTTCTGTTTCCTAGGTTGGTGTTATAGGGAATTTGGTACACTCATCCCCAAACATAAAGAAGGAAGTTCTTGCAGAAGGAGCTTTACAACCTGTTATTGGACTGTTAAGGTATTGCTTTGTATTTTAGCCCTACTAGCTTTATGTGAAGTTCAACCATCATAAATTTATTAGCCTTATTTTCTGTTTTCTAGCAGCCTTTATATTAGGATGATTTCCATCCACCCTACCTATTCACCTATGTTTTATTGACCTTATGCTTACCTATTAGTTTGAATCAACCATATTTTAGCTTCTAATCACACATTAGTGGCTCACTGTAACTTTACGTAACAATTGAAATTTCTACACCATAATTATGTGGCGGTAACACTTTCATGATGTTATGGGTGGTAGTTCGTCCTGCACAGAAAGTCAGAGGGAAGCAGCTTTATTGCTTGGCCAGTTTGCTGCAACTGATTCTGATTGCAAAGTATGTTCTCCCATTATCATTACTAATTTCTTTTTGTATAATCTGGAAACCAGTTTCTAAAGCGCATATCTTGTAGATTCATATTGTACAGAGAGGTGCTGTAAGACCTCTTGTTGAGATGCTAAAGTGTGAGGATATACAACTGAAAGAGATGGCTGCATTTGCTCTAGGGAGGTTGGCTCAGGTTAGTTGTTTTATTTGTTGTAAACTTGTTACCTTTTGCAGTTAAATGTGATAAGTTTTTTTTGGTCATGTGTTTGCTCATATTTGTCTCAATTTAGCTCTACTTAGTTATAGTTCTTAGAATCATGTTGTGTTTATTAGACCAAGATATCCTCCTTGAGTATTTCATCAAAAAGGGGATCACCATTTGGATTTGAAATCTAATGATTTGAATTAATAATTTTCAACTATTGGTTGGATAGTAGTGTAGTAAGAAATAATACAACTTCTAAAGGTGATTGATGATGGGATACAACTTTAGAAAAGGGTATAATCTCCATAAGAAATGATAATCTCTTGACCTATCAATTATCATCATATTTTATCAAGTTATTTGTTGTGCTGGTTTGGATATATTTGTTTGTATTGGGTTTTATAAAAGCACAGCTACCCAATTTCTTGTGATGGTTATCCTCCAAAGGGAAAGCAAAACTATAATGCATATTTTGTACCATTGGTTTTCCTACTATGACATTGTAGAAATCAAAGAAACAGCTCTGTTATAATGCACTGTAAATTAGTGTTTTGTTTTCAACTGTCATCATCTTATATCAGTTAAGTAGGATAAGTATGTTACAACCGGGAGGATTCAAATTCAAAACCTCTAAATCTGCGCTATACTGTACTTGTTGTCCTTGACTGATTTTCTAAAAGAATTTTGTATTGAAAGAATTGATATTCCATCAATGAAATATTACGCTGTTAGAAAATGTGGTTTAACAAACTGTAATGTTGCATGTTGATGTAGTACCTGTTGTTTCCGAGGTTTGTGCTAAGACATTGCTAACAAACAACTGCTGTTTCCATAAACCATATAAAACAATTTTATTTTATTGTTTGCTCTTGTATATGCTGTATTACTTTAAGGTTTAATTATATTTTTGAACCATTATATAATGTGATGGTTCAGATATAACTATATTAGTAGCATGTCATTATATTAAAGAAAATCACCTGACATCATTATTCTTCCTCTTCTAGGATACAAATAACCAGGCTGGTATTGCATACGATGGTGGCTTGCTTCCTCTTTTAAAGCTTCTTGATTCAAAGAATGGTTCTTTACAACATAATGCAGCATTTGCCCTCTATGGAATTGCTGATAACGAGGATAACATTTCAGATTTTATTAAGGTGGGTGGATTTCAAAAACTTCAAGAGGGAGAATTTATAGTTCAGGCAACCAAGGACTGTGTGTCGAAGACATTAAAACGAATAGAAGAAAAACTTAACGGTCGAGTAAGTTTTAGCATTTTATTAAGCTGTTGTACAAACATTTTATTATCTTTTCTTATGTTTTTCTTGCTTTAGCTTAATTTTGTTTTCTCAAATGTACGTCTTTTTTATTGCATCTAGGTTCTGAGGCATTTGCTATATTTGATGAGAGTAGGAGATAGAGGTGTCCAAAGACGAATTGCTTTGGCTCTTGCTCATCTTTGCTCTCCCGAAGATCAAAAAATAATCTTCCTTGATAATAATGGTATAATCTTATTTTCTATGATGTATCATAATAACCGTTTTTATATAAGTTTCAAAATTGTGCTGTACTCTGGTGGTTTTAATAGGAAGTAGAACATCAATAGTTTGTTTGCCCAAACTGATTTAGTACCCTTGGACTCTTTAACAATTACAAAAATTATTTGTAATGAAATATATAGAGTTATTGGTTCTCTCGACCTTCATTTCTGCTAAAGATTTATTCTTTCATATCCTGTGTAAGATAAAATTCATTCCTACCAAGCACTAATCTGAAGATTGAGATGTTCATATTTACCTTTTGGTTGATGTGGCAGATAACTTCCATATCTTGTTTTGTCCATGTATCACAGATTTTTTTTCCATTGAACAATGATTTTGGTACAGCTTATATAGATATTACATAAGATATTTAAGTATGTATGTAGAACATGCAATTTTTTTCTATCTGAACCATTAACTTGGATATGAATATCGACTCAACCATTGATATGGGATTTGCATAAGATTTATTAACTGGAATTCTACTTTCAATGACAAGCATCTATCTAACGCAATATAATTTTATACATAAACGCAGGTCTTGATTTGCTTCTTGGTCTTCTTGTTTCTACAAATGCAAAGCAACAGCAAGATGGTTCTGTAGCTTTGTATCAGCTGGCCAAAAAAGTTGTGGCATTATGTACACTGGATGCACCTCTTTCCCCCACGCCTCAGGTTTGTTTTAGTGCACTGCATAAGTATTAGTATTACAACGCAACTAGTAAAAAAGTGTTAACCTTTTTCATCCGTTAGTATTCAAATATCTACTCGATCGAGTATGGTATATAGTCCAACACATATTGACATGTTAATAACACAATTGCAGGTTTACTTAGGTGAACATTATGTGAACAATTCAATACTGTCAGATGTTACTTTTCTTGTTGAAGGTGCGGCTCAAGTCTTCATTTCATTTGTTTTCATTCTCGATATGTATTTGAGTCATTTAGCCATAAAACACTTAATCATATGCGAATGGTCTGACATGCTACTTTCTTTAACAGGTAGACAATTTTTTGCACATAGGATTGCTTTGCTTGCCTCTTCAGACGCATTTCGAGCAATGTTTGATGGTGGATACAGAGTGAGTTGATTTTTTACTTTCATGTTATCATTGACCCTTGGCAGATGTGTGCAATCCATGACTTAATAATGTTATTTTTTTTCCTCAAAAATTTGACTAATAAGATTGAAATTTACTTAATAGGAAAAGGAGGCTGGAGTCATAGAGATTCCAAACATACGTTGGGAAGTGTTTGAGTTAATGATGAGGTATTCAGTACACCCCCTCTAAGTTGCTCAGTATTTTTTAAGGCTTATGACTGATTTATACTGTAAACAGATTCATATACACTGGATCAGTTGAAGTAAATTCAGAAATTGCACAAGAGCTTCTTAGAGCTGCAGATCAGTATCTCTTAGAAGGCTTGAAGCGGTCATGCGAATATGCCATTGCTAAGGTTAACATAACTTTCTATTTTCTTATCAATAAGCTGTACTAAGTATATGTTATCAAAAGTATTGTTTCTGTATTCATTTAGGATGTAAACATTGGAAACATCCCAACAATGTATGAGTTGGCAGAAGCTTACAATGCTGTAGCTTTGAAGCTAACTTGTATTCTATTCATCCTGAAGAATTTTAGTGAAATTAACAATGGGCCAGGGTAAGCTCCTACCTTATTTCTTCTCTCCTTTTATGCTCTTTTTTCTCTCCATATTTCAGCTACTAGTTATAGTGGTACAACTCATACCAGTGCCGTGTAATAGCATTCTCTACAACTAAGCTCTCTTGTCTTGTAATCTCTGATATAATGTTAATTTGTGTTATGCAGGCAATCTCCATTAGTGCAACGTATTGTTTTAGATATACGTATTTACTTCGGTAAAGCAATGCAATCCAAATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273043.1	3.2e-169	ARM REPEAT PROTEIN INTERACTING WITH ABF2
Swissprot	B9DHT4.2	1.7e-151	ARM REPEAT PROTEIN INTERACTING WITH ABF2
trEMBL	A0A5P1EFU7	2.3e-169	BTB domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G19330.1	69.67	0.0	933	ARIA	ARM repeat protein interacting with ABF2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g512225	AT5G19330.1	689	197	5	17	698	15	698	69.67	933
g512225	AT5G13060.1	676	293	4	22	694	47	721	56.07	765
g512225	AT5G19330.2	638	167	9	17	646	15	598	64.11	734

Ortholog group

Species	Genes
Allium cepa	g512225.t1
Allium fistulosum	AfisC5G03168; AfisC8G01030
Allium sativum	Asa1G04008.1; Asa4G04128.1
Arabidopsis thaliana	AT5G19330.1
Oryza sativa	LOC_Os05g33050.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00514.20	Arm	Repeat	192	227	27.7	1.7e-06
PF00514.20	Arm	Repeat	230	269	33.1	3.5e-08
PF00514.20	Arm	Repeat	314	353	25.4	9e-06
PF00651.28	BTB	Domain	536	635	90.2	8.9e-26

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0016020	C	membrane
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0008150	P	biological_process
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0010029	P	regulation of seed germination
GO:0010033	P	response to organic substance
GO:0010187	P	negative regulation of seed germination
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048519	P	negative regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050896	P	response to stimulus
GO:0051093	P	negative regulation of developmental process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0065007	P	biological regulation
GO:0071944	C	cell periphery
GO:0097305	P	response to alcohol
GO:1900140	P	regulation of seedling development
GO:1901700	P	response to oxygen-containing compound
GO:2000026	P	regulation of multicellular organismal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network