result

Gene information

Detail information of g51292

Location

Gene	Chr	Start	End	Strand
g51292	Scaffold_29199:HRSCAF_263512	492015	493817	-

Sequences

CDS

Protein

Gene

>g51292.t1
ATGGATAATACATTCAACTCTTTCATGGAAATCCCTGATCAGCTTGGCTATGTTCAGTGCGGGTTTTGTACCACAATTCTCCTGGTATATATTCTAAATTTACAGCATGCAGATTTATATTATTTCTATATATTATCTACTGAAACAGGAAATGATTTTTGTTTCTTGAAGGTGGGCGTGCCACACGATAGTAGAGAACTGGTGACAGTCAAATGTGGGCATTGTGAATGCCTTCTTTCTGTTAGTTTGAACATTCAACCAGCTTCTTTTCTTCCAATTCAACTCATCACTTCGCTTGGAGTTGGAAATGATTATCGTAACGTTGAGGTATTTACATATATGGTCTTTATTTTCGGTATTTCCATTGTAACTTTTCTTTTAACAAGTAGATTTACCATAACATGCAAGAGAACCTATTTTATTGTAGATTCAGTAAAGAAATGATTCTACTCACTACTCAGAAAATGCAATGTCATGAAAAAATATGGGAGAATACAAAACCATTACCAAGTAATTATAAAAATGCACTAATGTACAACAAAACACAAAACGGTTGAACTTAACACAATCAAGTGTGTACTTTTGTAGACCTTATTTTTGAATCTTATCATTGACCCTGATTTCTTTTGTAACCTACTACTCCGAGTCTAAGGTAGGAAATCTAAACCTTTATACACAAAATAAGTCGGAACATGACAATATCACATAAATTGTATATGTGACATTTAAATGTAAAAATTAAACTGTTCGTTTATAGTTGCTTCATCAACAGATGCACCTAGCTATAATGAGGCAGAATAGGAATAAAATAGAAAAAGTGTCCTAGTTTAATGTGCTTTTATATTAAATATGTAAAAATTTCTTACCCATATACAGTAAGAATATAAAACATCTTCCACAAATAAAATTACTCTTAAAATTCCTACATTTGTCAGGCTAAACAACAACCAACCGATGATGCACTGCATAAAGCTTGCAAAAGTGAAGCAGATGTACATGAAGAAAAGCATGAGGAGGAGACAGATGAGGATGAAGAGGATGATACACCTCTCAGTTCCATTACTAATATCAACAAACGTAAAATCTACTTTTATTATACTCAACATCTACACATGGTGGATTACTTGTAGTTACTTACTTTCAATATGTCCTAACAGCTCCAGAGAAAAAGCAAAGGGCTCCATCCGCTTATAATCAGTTCATCAAGTAATTTACATATAGTACAACCTCAATATCTCTAGTAACTATTGTACGTGTGTAGAGATGTCTTGTTTACTGGCATATTAATAATAAATAACAAATACAGCCTCTTCATTGGCTTCAACTGGCTAGGTGAAAGTTTACGAAATAAAATCAAACCTAGCATATTTGTTTCCTCATGCAGAGAGGAGATCCAGAGGATCAAAGCAATAGAACCACATATCACCCACAAAGAAGCCTTTAGTGCTGCAGCAAAAAATGTAAGCAGCCATAAAAACACCAATATAGATATGGTTAATTATCTGAAAGCGGTATTGCAATGTGCAGTGGTCTCACTGTCCCCGGCTTCATTACAAGCAACAAAGAAAAGGAGATGGTGCAAGCTGCAGTCGTGCTAGTCCTATTATTAATTACGCAGATGTTGAGGTTATTAACATTCTATTATTGTTATTACAATTAGTTTTCTGCATAATCACTTGATATTCTCTGAGAGTAAACATCAGAAGTTCAACCGGTTTTGACAATTTTCTTGAATATTTGTAGGAAGACAAACGGACTCAGGTTGATTGTGGGAGAAAAATATCAATGAAATCTATCATATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263790.1	3.6e-42	LOW QUALITY PROTEIN: axial regulator YABBY 4-like
Swissprot	O22152.1	8.3e-28	Protein antherless
trEMBL	A0A1U7Z7V4	6.1e-36	axial regulator YABBY 4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G23420.1	45.93	7e-36	147	INO	Plant-specific transcription factor YABBY family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g51292	AT1G23420.1	209	99	6	1	204	7	206	45.93	7e-36	147
g51292	AT2G45190.1	169	85	4	13	178	23	187	45.56	2e-30	129
g51292	AT1G08465.1	174	86	5	13	185	8	165	40.80	2e-29	125

Ortholog group

Species	Genes
Allium cepa	g51292.t1
Allium fistulosum	AfisC2G08384
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04690.10	YABBY	Family	12	179	176.2	6.8e-52

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009798	P	axis specification
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009943	P	adaxial/abaxial axis specification
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009955	P	adaxial/abaxial pattern specification
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0035670	P	plant-type ovary development
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048440	P	carpel development
GO:0048467	P	gynoecium development
GO:0048481	P	plant ovule development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065001	P	specification of axis polarity
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network