result

Gene information

Detail information of g513488

Location

Gene	Chr	Start	End	Strand
g513488	Scaffold_89744:HRSCAF_472830	1145076	1148514	+

Sequences

CDS

Protein

Gene

>g513488.t1
ATGTACGAATTCAATGAAGCTGAGATCGATGAGAGGCTTGTACTGACTAATGATCCAAAGCCGAGATTGAGATGGACCACTGAGCTCCATGAAAGATTTGTTGATGCAGTAACTCAGCTCGGTGGACCTGATAGTGAGATTTTCTTAACTTTATTTTTGGTTTTTGTTGAATTTCCAGATACCAATTTATTTATTTATTTTATTCATGGTTCGTGCTCGTTTGATTATTGATAATTTATATGCTGTTATGGAAGAATGTAGACTGTTTCGGGGATGTTAAATTGGAATAATATGTATGTATCTTCTGATTATGTTTAGTTTAAAACATTTCTGTCTAAACTAGCCACTGAATTTAAATGAAAACAAATAGTTGTCTGCAATATCAGCATAATTTGAGTCACTTTTGGCTTAATATTTCTTTAAGGCCTCTTAAGTTCAGAAAAGAAAAAGTATGTTTCGAAGAGGTAACAGAAAAAAAATGTTTATTATCCACTGAATTTAAATGAAAACAAATAATTGTCTGCAATATCAGCATAATTTGAGTCACTTTTGGCTTAATATTTCTTTAAGGCTTCTTAAGCTCAAAAAAGAAAAAGTATGTTTCGAAGAGGTAACAGAAAAAAATGTTTATTATCCACTGAATTTAAATGAAAACAAATAATTATCTGCAATATCAGCATAATTTGAGTCACTTTTGGCTTAATATTTCTTTTAGGCTTCTTAAGTTCAAAAAAGAAAAAGTATGTTTCGAAGAGGTAACAGAAAAAAATGTTTATTATCCAAAATCCAAAAACTCTGGGACACAGATTCTACTATAAAGCTAAAACTGAAATATTTTTCTTTTCGAAAACAATTTTTTTTGGATAAACAAACCAATAAAAACTTATTGCACACACATCATTTTTGTATAAACAAACCAATAGAAAATAATATGCACTGACTTTGAGCATTTCATATATTACAGAAGCAGAACACTGAAATGTTGAGTTTCATGTATGAAATTCATAGATATACAGGGTCTTAATCTAGGACTTAGGACTTCCAGAGTAATTTAATGAATCCCAGTGATACTCATGGTGGCAAATTTGAGCAAATAGGCTGTGATACTCACATTACGTCAAAAATCATTGAAACAGCGATACAGTTAAAGATAAGTGGACATTTTATTACTATTCAATGTTAAGTATTTTAGATAGTGCTGTCAAAACAAGTCATTTTGATAACATTCATCATTTGCTTACGCAAGCATATGATTTACTTGGTCATAAATCTTGGTCGCATCTCTAACTATTTGAGTTTGGTCAATAAAGGATGGCTTCTGATCAGCATCAAACAAATATTACCAAACTGTTTATTATTATTCTTCTAATGTAGGACACGCTAAAATGGATAATAACAATAAGCTATAAAAGACTTATTGATAGTTAGTTGGTTTAAGATGAGTGAGTTGGACAAATTGAGCTCATTGTGCTCTTGATTGCAAGAATTTGTAATACATGCTTATGGCAGATTTGACTCATTATTTGGACAAACTTGTATGATAAATGATTTGGACAAATTTATATAAAAACATGACTTGGACATACTAATTATGAACAATTATACTAGGGTCATCATTTTCATTAGTATAACAATACATAGTTATGATTGCAAAAATTTATTTAATATATCAGTGACATATGTTTCCCTTGTTATATAGTAGAATTAATCTGTTGCTGCTTGAGAAAATATTTTTGTATATGTCTGCCTGTGTATTAAAAGCCACTTGTGTAAGAGAGTTGGTATGAGCAAGTCATCTTTTTTGGTCGTGTCCACTGATAACTTCTTAACATAATTATTCTTATTTGAGGATGGGATGAACATGAATAGTATACTTCATTGAATCATATTCTTTGTCAGTTTGTTAAATTTGAATTATAATAATGCTTAGCTTCACAAATGGGCTGATGTCTGATGCCGACTAAAATAGTTTATTGAGGTACATGATGTGTAATTGTTTAACAGTTATATATTTTCATTCTTATGACTGGAACAGGAGCCATTATACTTAGCCTCTGACTGCATTATCTTTAGTGAGGTAGAAATAGATTACAATAACCAGGACATAATACTGTGTGTACCTAAAAATATGTCTCAGTTTCATTATATGATATTAGTGTGTAATATAGTGTACATTTCCGGAAACACTAAGAATGAGGTACTAAAGAGTAAATACCGTCTGTATTTTGTATTTACTTTATTGCATTTCTTTTGCAGAAGCAACACCAAAAAGCTTACTTAAAATAATGAATATAAGGGGTCTTACCCTTTTCCATTTGAAGAGTCATCTTCAGGTAAATTTCTTAACCAAGTGGTCACGTGGCTTTATTTTTCTAAAAAAATGTATTATATTCACTCTATGTGAACTGGAAATTAAAACTATGAACTGTACATCTAAGTAGCAAAAATCTTAGAATATACAAGTTGTGGTAATTCATCGATAATTCTTGCTTGTTAACTTCCGGAGCTTGTATGTTTGTCGATGTGAAGACTTAAATTACTTATGACCATTTATAAAAAGAGAGTAATAGTTTCTGTTTTTGCCATATTCTAATCATAGTTTTATAACATCTGTGTTTGATCAATATGCAGAAATATAGATTAGGGAAGCAATCATGCAAGGAGTTTCTTGACAATTCTAATGATGGTAGTTCATTTTTGCCTCTCTATTTGTTATTGGTTACTTGAATATTTCACTACAACTGCAAAATTTTACAATTATATTTTGGTACGCTTCTTTTATGAATTCTTCTATTAGGTACAGTTTCTGGTGCTGATAATGAGCGCAAGGAGCCTAAACCGTCTAAGCCTTCTTCAACTGTAATAACCCAGGAACAGAACGAGTATGATTGCTTTCAACCTCTATTTATATGTACAATCATATATTTGATTTTATTATTTGCATTTTTTTTATATTGGTAGTGGGTACAATGAGGCAATGAGAGTCCAAATGGAGCTTCAGAGGAAGCTTCATGAACAGCTAGAGGTTCTTGCTTTCATGACTCGCTAAATACATCATATACATGAGTATTTATTTATACACATGAATGATATATAACATAGATTCTGTGTTCATTTTGAAAAGGTGCAAAGGCATGTCCAGGTTAGAATTGAAGCACAAGACAAGTATCTGCAATCTATTCTGGAAAAAGCATGCAATATTCTCATATGCCCTAATTTTGGAACAACCGATGATCTTTCAACTCTTCCAGTATTAGAATCAGAATGCACCAAATTTCCAAGTGAAAATATCAAAATGCAGTACTTAGCGGAGATGAACATTTCTTGCTTGCCACAGATTACTGAATGTTCGGTGGATAGCTGCCTCACATCAACTGAAACACCAGGAAATGTTTACACGTTTAAGAAGAGGCCTTATGCTTTGCTTGGTATGGATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020245915.1	6.4e-53	LOW QUALITY PROTEIN: protein PHR1-LIKE 3-like
Swissprot	Q8LAJ7.1	6.7e-39	Protein UNFERTILIZED EMBRYO SAC 16
trEMBL	A0A1D1XSR8	5.9e-48	Myb family transcription factor APL

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G13640.1	49.40	2e-59	225	UNE16	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g513488	AT4G13640.1	249	106	6	9	240	26	271	49.40	2e-59	225
g513488	AT4G13640.2	252	106	7	9	240	26	274	48.81	8e-58	220
g513488	AT3G24120.1	246	98	9	10	234	31	273	50.41	3e-56	215

Ortholog group

Species	Genes
Allium cepa	g513488.t1
Allium fistulosum	AfisC4G05577
Allium sativum	Asa5G04597.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	22	73	31.7	1.2e-07
PF14379.3	Myb_CC_LHEQLE	Family	120	163	82.8	8.9e-24

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0007154	P	cell communication
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009267	P	cellular response to starvation
GO:0009566	P	fertilization
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009605	P	response to external stimulus
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0009991	P	response to extracellular stimulus
GO:0010087	P	phloem or xylem histogenesis
GO:0010088	P	phloem development
GO:0010089	P	xylem development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0016036	P	cellular response to phosphate starvation
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019953	P	sexual reproduction
GO:0022414	P	reproductive process
GO:0033554	P	cellular response to stress
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0031667	P	response to nutrient levels
GO:0031668	P	cellular response to extracellular stimulus
GO:0031669	P	cellular response to nutrient levels
GO:0032502	P	developmental process
GO:0042594	P	response to starvation
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0044703	P	multi-organism reproductive process
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0051704	P	multi-organism process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071496	P	cellular response to external stimulus
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network