Gene | Chr | Start | End | Strand |
---|---|---|---|---|
g515243 | Scaffold_89923:HRSCAF_473009 | 460127 | 477206 | + |
CDS |
Protein |
Gene |
Database | accession number | e-value | annotation |
---|---|---|---|
nr | XP_020261860.1 | 7.9e-101 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 |
Swissprot | Q2QT65.1 | 2.9e-76 | Zinc finger CCCH domain-containing protein 66 |
trEMBL | A0A5P1F3N5 | 5.7e-101 | Zinc finger CCCH domain-containing protein ZFN-like |
TAIR id | % identity | e-value | bit score | gene aliases | Short description |
---|---|---|---|---|---|
AT3G02830.1 | 56.30 | 6e-124 | 441 | PNT1;ZFN1 | zinc finger protein 1 |
Species | Genes |
---|---|
Allium cepa | g515243.t1 |
Allium fistulosum | AfisC1G06846 |
Allium sativum | Asa7G02730.1 |
Arabidopsis thaliana | AT3G02830.1 |
Oryza sativa | LOC_Os01g68860.1; LOC_Os01g68860.2; LOC_Os01g68860.3; LOC_Os11g28270.1; LOC_Os11g28270.2; LOC_Os11g28270.3; LOC_Os12g21700.1 |
Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
---|---|---|---|---|---|---|
PF00642.21 | zf-CCCH | Family | 38 | 63 | 33.3 | 2.9e-08 |
PF00642.21 | zf-CCCH | Family | 83 | 107 | 40.0 | 2.3e-10 |
PF00642.21 | zf-CCCH | Family | 130 | 154 | 33.3 | 2.9e-08 |
PF00642.21 | zf-CCCH | Family | 279 | 304 | 35.9 | 4.3e-09 |
PF00642.21 | zf-CCCH | Family | 325 | 350 | 39.9 | 2.4e-10 |
Accession | Ontology | Name |
---|---|---|
GO:0005515 | F | protein binding |
GO:0005622 | C | intracellular |
GO:0005575 | C | cellular_component |
GO:0008152 | P | metabolic process |
GO:0003674 | F | molecular_function |
GO:0003676 | F | nucleic acid binding |
GO:0003677 | F | DNA binding |
GO:0003723 | F | RNA binding |
GO:0003729 | F | mRNA binding |
GO:0003824 | F | catalytic activity |
GO:0004518 | F | nuclease activity |
GO:0005829 | C | cytosol |
GO:0005488 | F | binding |
GO:0005623 | C | cell |
GO:0005737 | C | cytoplasm |
GO:0006139 | P | nucleobase-containing compound metabolic process |
GO:0006417 | P | regulation of translation |
GO:0006725 | P | cellular aromatic compound metabolic process |
GO:0006807 | P | nitrogen compound metabolic process |
GO:0008150 | P | biological_process |
GO:0009889 | P | regulation of biosynthetic process |
GO:0009890 | P | negative regulation of biosynthetic process |
GO:0009892 | P | negative regulation of metabolic process |
GO:0009987 | P | cellular process |
GO:0010313 | F | phytochrome binding |
GO:0010468 | P | regulation of gene expression |
GO:0010556 | P | regulation of macromolecule biosynthetic process |
GO:0010558 | P | negative regulation of macromolecule biosynthetic process |
GO:0010605 | P | negative regulation of macromolecule metabolic process |
GO:0010608 | P | posttranscriptional regulation of gene expression |
GO:0010629 | P | negative regulation of gene expression |
GO:0016787 | F | hydrolase activity |
GO:0016788 | F | hydrolase activity, acting on ester bonds |
GO:0017148 | P | negative regulation of translation |
GO:0019222 | P | regulation of metabolic process |
GO:0031323 | P | regulation of cellular metabolic process |
GO:0031324 | P | negative regulation of cellular metabolic process |
GO:0031326 | P | regulation of cellular biosynthetic process |
GO:0031327 | P | negative regulation of cellular biosynthetic process |
GO:0032268 | P | regulation of cellular protein metabolic process |
GO:0032269 | P | negative regulation of cellular protein metabolic process |
GO:0034248 | P | regulation of cellular amide metabolic process |
GO:0034249 | P | negative regulation of cellular amide metabolic process |
GO:0034641 | P | cellular nitrogen compound metabolic process |
GO:0043170 | P | macromolecule metabolic process |
GO:0044237 | P | cellular metabolic process |
GO:0044238 | P | primary metabolic process |
GO:0044424 | C | intracellular part |
GO:0044444 | C | cytoplasmic part |
GO:0044464 | C | cell part |
GO:0046483 | P | heterocycle metabolic process |
GO:0048027 | F | mRNA 5'-UTR binding |
GO:0048519 | P | negative regulation of biological process |
GO:0048523 | P | negative regulation of cellular process |
GO:0050789 | P | regulation of biological process |
GO:0050794 | P | regulation of cellular process |
GO:0051171 | P | regulation of nitrogen compound metabolic process |
GO:0051172 | P | negative regulation of nitrogen compound metabolic process |
GO:0051246 | P | regulation of protein metabolic process |
GO:0051248 | P | negative regulation of protein metabolic process |
GO:0060255 | P | regulation of macromolecule metabolic process |
GO:0065007 | P | biological regulation |
GO:0071704 | P | organic substance metabolic process |
GO:0080090 | P | regulation of primary metabolic process |
GO:0090304 | P | nucleic acid metabolic process |
GO:0090305 | P | nucleic acid phosphodiester bond hydrolysis |
GO:0097159 | F | organic cyclic compound binding |
GO:1901360 | P | organic cyclic compound metabolic process |
GO:1901363 | F | heterocyclic compound binding |
GO:2000112 | P | regulation of cellular macromolecule biosynthetic process |
GO:2000113 | P | negative regulation of cellular macromolecule biosynthetic process |
KO | Name | Enzyme ID | Pathway | Pathway ID |
---|---|---|---|---|
- | - | - | - | - |