Detail information of g515243


Location
GeneChrStartEndStrand
g515243Scaffold_89923:HRSCAF_473009460127477206+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020261860.17.9e-101zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ2QT65.12.9e-76Zinc finger CCCH domain-containing protein 66
trEMBLA0A5P1F3N55.7e-101Zinc finger CCCH domain-containing protein ZFN-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G02830.156.306e-124 441PNT1;ZFN1zinc finger protein 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag515243.t1
Allium fistulosumAfisC1G06846
Allium sativumAsa7G02730.1
Arabidopsis thalianaAT3G02830.1
Oryza sativaLOC_Os01g68860.1; LOC_Os01g68860.2; LOC_Os01g68860.3; LOC_Os11g28270.1; LOC_Os11g28270.2; LOC_Os11g28270.3; LOC_Os12g21700.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00642.21zf-CCCHFamily386333.32.9e-08
PF00642.21zf-CCCHFamily8310740.02.3e-10
PF00642.21zf-CCCHFamily13015433.32.9e-08
PF00642.21zf-CCCHFamily27930435.94.3e-09
PF00642.21zf-CCCHFamily32535039.92.4e-10

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003723FRNA binding
GO:0003729FmRNA binding
GO:0003824Fcatalytic activity
GO:0004518Fnuclease activity
GO:0005829Ccytosol
GO:0005488Fbinding
GO:0005623Ccell
GO:0005737Ccytoplasm
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006417Pregulation of translation
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010313Fphytochrome binding
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010608Pposttranscriptional regulation of gene expression
GO:0010629Pnegative regulation of gene expression
GO:0016787Fhydrolase activity
GO:0016788Fhydrolase activity, acting on ester bonds
GO:0017148Pnegative regulation of translation
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032268Pregulation of cellular protein metabolic process
GO:0032269Pnegative regulation of cellular protein metabolic process
GO:0034248Pregulation of cellular amide metabolic process
GO:0034249Pnegative regulation of cellular amide metabolic process
GO:0034641Pcellular nitrogen compound metabolic process
GO:0043170Pmacromolecule metabolic process
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0048027FmRNA 5'-UTR binding
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051246Pregulation of protein metabolic process
GO:0051248Pnegative regulation of protein metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0090305Pnucleic acid phosphodiester bond hydrolysis
GO:0097159Forganic cyclic compound binding
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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