result

Gene information

Detail information of g515914

Location

Gene	Chr	Start	End	Strand
g515914	Scaffold_90019:HRSCAF_473105	259686	262542	-

Sequences

CDS

Protein

Gene

>g515914.t1
ATGAGTAAAAGACATTTGAATCATCATTCCTCTTCCCAAAATTCTATAGAATGGCAATATAGAAATGAATCCATGAATATTTCTCTACCCAACTCTTCAATTCCTGTTTATCATGGAAGCAATAACCCACAAATTTCAATGCCTGAGTTGTATTACAATAGGAGTGATATGGAGTCATTTATACCCGTACATGTTGATATTGTTCCATCTACCTTACCTGATTTTCCGACCGACTCTTCTTTTATCGAGAGAGCTGCAAAGTTTTCTAGCTTTAGTGCTGGGAATTTCACTGCACTGTTGAATCCTTTAAACACTTCTATGTCTATTGATCATGTACATAGATGCGAGAGTTTGAGTAGAAATGAAGAAACTAATAATTTGACAAATCTTTCCGGGGACTCAAAGAAAAGAAAGAGTTGTAGTAAGGTACTAGTATGTTGATCAATTATATGTTATGGTTATTTAAATAAAATATGTATTTTTAAATTTTGATTTACTTTGTTTCGTATGGAAGGATATGGAGTTAGAACAAGGCACACAATTTTCTGGTGAAGTTATTAAAGAAAATGTTGTGAGCAAACAGAATAACGAATGCAGCAGTTCAACTCCTAATGAGAAAAAATGTAATGGAAAGAATAAGAAAATTAGTGTGGACGATGAACCTAAGAAAGATTATATTCATGTAAGAGCTCGTCGCGGACAAGCAACAAATAGCCACAGTCTTGCTGAGAGGGTAAGTGGCGATTAATGGCATTTATTTGAAGTTATATGTACGTGATGTTCAGATATAGTTTTATCGATTTTTCTTACTTGCTTAAACTTGAATGTAGGTGAGAAGAGAAAGGATAAGTGAAAGAATGAAGTACCTTCAAGATCTTGTGCCTGGTTGTAATAAAGTAGGTATATTTAGTGTTTTACTTTTGTATGTCTTCTGAAATTAACTATAGTGAAAAAACCATAGTAGAAAAACATCTTGCTTGATGCACCATTAAGTTATGGACTAAAACAGTTTAGATTAGTTAGGTCCTTAAGTTCACTATGCCGAGTTGGATTTGGATAACCGACTTTGGTTCAAAACCATGCATCAATTGGTCTGTAGATCTTTGATTGAAGAACACTTGATCTAATTTTCAAACAGAGCAAATTGTCGGAGTAAGAAATTCAGTATGTTATTGAATACGATGTTTTTGAACGGTAGGTCACAGGAAAGGCGGTCATGCTTGACGAGATCATCAACTATGTTCAATCTTTGCAACGACAAGTTGAGGTGTGCTAATTACAATATGTTCAATGTAAGACTTTGAAATTGACACCTGAGTAGTAATTTTTTTTCTTTCTTCCATGTATAGTTTCTGTCTATGAAGCTTGCAACAGTTAATCCAAATATCGATTTAAACATAGAAGGACTCCTATCTAAAGATGTAAGTTAGCATTAACATTTGTACTAATAGTTGTAACATGCATTGGCCAAATCATTACAGCTAATTATGACAATTTTCAGCCTCGATTTGGTCCATCAACAGTAGCTTTCAATGCGGACTTGCTTCAACCTCAACATAGCATGCTTCAGATGGGTGTATCTGGCATGGCAGATCATGCTGATTCTCTTAGAAGGATGATTAGTTCACAGTTTTCAGCTAGTAATGGATTAAAAGAACCACCACATCCGGTATATTTTTGTAGCCTATGTTTTCTTTTGGCTTGCCATTAATGTCAGTTGCAACTTATTATACATACTACTAACTAGTATAGTTAGCCCAAAGGCCCCAAACCTTTAGTACAATGTCGGCATTACCAAAATCAAAGTTTGAGTTTGAGGTTCCTATATTAACAAAAATTGGTACCCCTAAAATGTACTACTTCGTAGATTATATGATACATTCAATGAAAGGGATAGTATGATTGGTGTAGTAAGCACCAGCACCCGTCTTTACTAATAATCCACATGTCGACGTTCAGTACGTTAAGAAACTGATCCTACGAGACATCATTATGAATGTAGATTTACACACCTAATGCCATTTACCAAACAATTATTGATTATGTCTTTGAGATCTGTAATTGCAAACTTATACTGTCTTTCTTAGCTACAGTAGCTGGATATAAAAAGTAAAGGCAAGTGCCGAAGACCATCTCTTTTATTAGGCATTTGTTTGGCGGAAAATCTTATGTTTTGACGTTGGATTTGCATTTCAAAAGTAAGATAAGTTGGAAGCATATAACTAACCCTAAAAGTGTAGCACATCATATTCTGTGCATATAATATCTTAAGTTGATTAATTTTAGAACCTCTACACTATGATATTGATTTTGCAAGGCATATCCATGCTTGGTTAGATAATGAAAAGAGACTCCACTTTTAACATTTTGCTTCAATTAGTACTTAAATTTAACACATTGAAGAGTTGTATGTTAAATCTGACATTTTATTAGTCTTTCCGTTTTAAATCCATATATATGTATGTACGTACGTACGTACGTATGTTCTTGTTCAATAATCCATTTTTAGAAATCTGGTGGATCAAATTTTGTCCATATCAAGCCACATTCAATTCATTTTATCCATAATTACATTTCCACCAAAAAAAGCTTCTTGGCATTGTCACAATATATATGCACATAGAATTCCATATTTGCAAGATGTTGTGGAAATCCACTTACATTTAATATCATGGATTGCATACCATTCATTTCTCACATGCATTTGTTTGACCAAAGATCTTATGTCCATATACAGATGCTGAATCAATGGGAGACCGAGCTCCAAAGCATGGTCCAAATGAACATCAGGACCAGTCTACCCTCAAACACTTCTCAAGGGCAAAACGGTAAACCTCAAGATAGCTTTCCCTTATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250537.1	1.4e-102	transcription factor bHLH49-like
Swissprot	Q9CAA9.1	7.0e-43	bHLH transcription factor bHLH049
trEMBL	A0A1R3L5Y7	1.0e-102	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68920.3	44.54	3e-63	239		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g515914	AT1G68920.3	357	129	12	60	356	111	458	44.54	3e-63	239
g515914	AT1G68920.2	358	131	12	60	356	111	459	43.85	1e-62	237
g515914	AT1G68920.1	358	131	12	60	356	111	459	43.85	1e-62	237

Ortholog group

Species	Genes
Allium cepa	g515914.t1
Allium fistulosum	AfisC2G09435
Allium sativum	Asa6G00406.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	208	256	28.3	1.1e-06

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009314	P	response to radiation
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009637	P	response to blue light
GO:0009889	P	regulation of biosynthetic process
GO:0009909	P	regulation of flower development
GO:0009911	P	positive regulation of flower development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0048518	P	positive regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048582	P	positive regulation of post-embryonic development
GO:0048831	P	regulation of shoot system development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051094	P	positive regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051240	P	positive regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2000243	P	positive regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network