result

Gene information

Detail information of g516317

Location

Gene	Chr	Start	End	Strand
g516317	Scaffold_90077:HRSCAF_473163	200241	201973	+

Sequences

CDS

Protein

Gene

>g516317.t1
ATGTTTAGGAGTTTGCCTGAAAACTGTGGTCTGCCAAGCTACTTCATGGCCACAGCCATGCAAAGAGGGGAAGGTTTAGAAGAAATTCCTTTAGACCGAGCTTTGTTGGCATCAAAAAATCATAGAGAAGCTGAGAAGAGGAGAAGAGAAAGGATTAAATCTCATCTTGATAGGCTTAGAATGATTCTAGCTTGTGATCCTAAGGTATGTTGTTATTATATATAGGGTTAAAACTAATGATTAGAAATTTTATCAAGGAATGTTAATAGATATTTATTTTTTACTTTCCATCAAAGGATTTCTGTTTTAGGTTTTTCAGTTTTATAATTATTTTACAATTGTTATGTCTCATTTAATTACATCCTTTGCTATAATTATATTATAACCCTTATCATATTATGTTTTGGAACACTTATCTTGTATGTATGGAAGGGATCACCTCACAGCGTCTAATTTTATTAGATCTACACAATCTGAACTGAAACGAAAATTTGTTGATATGTTCTTGAATAGCACAAAACCATACTTGGAAAATATTTATATCTTTGGAAAATCCTAGGGTATTCAAAATAAAATTTCAAATCTCTTGTTTTATACATGGTTTTGCTGTTCATATTAATCTAACATTCAGAGCAGAATAAAGATTTCGAAATGGTCTATGTTTCTGTGGTCGTATTCTTAATTACCAAAGATTTGAAAATCTCAAAAAAAAAAAATTATTTAGAATTTAATTTTGTCGCTCTAAAGAAGTACAGGGTGTGTTGACAAAGTATAGGTTATGAATAATAGATGCAATTGAACGATCGAATAGAAACAAAAAAGATATTTAAAACTTCTGTTTAATATTTTTTGAAATATGCACATAACATGGAACCAGTAATTTTATGCACTGTTACATGAAGGAGCTATAACATTTCGCTAATCGTGGTTTCTTACTAAATAAACCAAATAAATAGTTTTTGTGATCACATTTTCGGTTCTATTATTTTCTTTTCTTTTTTATTAAATTACAAAATTTAAGAAATTCTCATCATGTGAAAGATTAGAGGTAGAAGATGAAATTTGCTAAAGTTTATGACTTTTGTTAAGCACCATAAAGGGAACTTAACTTTAGTTTACATCTCGCTTCTAACTCTTAAAGCGAATACATCGAAACATTCATGTATCCAAAATCATGAAAAAATTGGGAGACTTAAAGCTGTTGAACTTTATAGCTTCAACTTTTATTATTAACAGCTCTAGCTAGGGTTTGTTATCATTAATACCCACTTTAATCACTGCAGACAGACAAAGCGTCACTACTGGCTAAAACAGTAGAACATGTACGCGACTTAAAGCAAAGAATGTCAGAAATGACCAACTCTAGCATCAGCACTCGTATCTTTCCTTCTGACAATGATGAAATTTTTGTTATGCCTAAAACGGATGGTCAAAGCTCGATCTTTGAAGCATCAATATGCTGTGATGATCGTAGCAATCTTTTCTCCGAGACAACAGAAACTCTACGTTCCATTCACATGAAGACTCTAAGGGCTGAGATTGTGACACTTGGAGGTAGAGTGAGGAATGTGATGGTTCTTGCAAGAGAGAAAAATGAAGAATACATCGACGATGCTAACGTTGATAATGATGATGATGATGATATTAGTTTCTTAAAAGAGGCTCTTCTTACTCTTGTTAATGATTCAAGTTCTTCGGATCGAATAAAAAGAAGGCGTGTTATGGATGCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020243536.1	8.6e-57	transcription factor bHLH106-like
Swissprot	O80674.1	3.4e-34	bHLH transcription factor bHLH106
trEMBL	A0A7M3UQJ7	5.2e-64	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G56770.1	41.29	2e-35	145		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g516317	AT3G56770.1	201	87	4	32	216	40	225	41.29	2e-35	145
g516317	AT2G41130.1	183	82	3	27	206	57	227	46.99	6e-34	140
g516317	AT3G25710.1	212	98	5	33	214	128	335	37.74	4e-26	114

Ortholog group

Species	Genes
Allium cepa	g516317.t1
Allium fistulosum	AfisC3G02540
Allium sativum
Arabidopsis thaliana	AT2G41130.1; AT3G56770.1
Oryza sativa	LOC_Os03g59670.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	39	85	40.0	2.6e-10

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0006972	P	hyperosmotic response
GO:0008150	P	biological_process
GO:0042493	P	response to drug
GO:0009507	C	chloroplast
GO:0009526	C	plastid envelope
GO:0009536	C	plastid
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009889	P	regulation of biosynthetic process
GO:0009941	C	chloroplast envelope
GO:0010033	P	response to organic substance
GO:0010200	P	response to chitin
GO:0010243	P	response to organonitrogen compound
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031967	C	organelle envelope
GO:0031975	C	envelope
GO:0042221	P	response to chemical
GO:0042538	P	hyperosmotic salinity response
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044434	C	chloroplast part
GO:0044435	C	plastid part
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1901698	P	response to nitrogen compound
GO:1901700	P	response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K22484	CBF1; transcriptional regulator CBF1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network