result

Gene information

Detail information of g516442

Location

Gene	Chr	Start	End	Strand
g516442	Scaffold_90103:HRSCAF_473189	187860	195950	-

Sequences

CDS

Protein

Gene

>g516442.t1
ATGCATATCAACGGAGTACTAACTGACTCCTCTATCGACCTCGCACTGCATATTGGCCTCCCTAACAACAACCCCTCATCTTCCATTTCAAACCAAGCCTCATATAATTCTCAAAGCCAAGGAAGTAGTTCTTACAATAATCTTCCATACATGGAAGCTGAAAGCTCTTTGATTCCACAACCAATAAGAGGGATTCCAGTTTACAAGTACATAAATAACAATTATGGGCTAGTTTATAAGTACATGAATAAGGTTACTGGGATTGGTCATAGTCAGCAGCAACATCATAATATGATGAGGTTCACATCAAGAGTGGCGGGGAAGAGGAGTATGAGAGCACCGAGGATGAGGTGGACCAGTGGTTTACATGCCAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGTCATGATAGTAAGTTCTTTTTATCTTTTTATTGTTTGTTGCATCATCAGATGAAACTATTTGTTTTTGCAGTTTAGGGTTTCCAATGAAATAATGAAATAGCCCTAATTTTTGTATGTCTAACATTTGGGGGAAGATGTTAACGTTCAGTGATTTGAGTGTGTAGATACGTTATTCATTTTTATCTCGTTGGTACAACTTTAATTTTTGTTTGAAGGTAGGTGCTGCTTCACTTCATTTTTGACTTCTTTTGTAGAAACCTAAAATTTCAACTTCATTGATATGTAATCTGATTGAATTCAGAAACCCTACTTGAATTGGGGAAATACATTTTGGTACATGAATTTTTAATTATTGAATTTTTAATGTTTAACTGTAGGGGCTACACCAAAATCAGTGTTGGAACTGATGGATGTGAAAGATCTTACACTAGCCCATGTCAAAAGCCATTTGCAGGTATTCTCTACAGTTTAAAAGTCTCTCTCTCTCTTTGTTTTTTCCACTACACATTAATTACTACCGTTGTCCCTAAATTAAGTCTTTTTTAGGAAGTTAGGAAATGTAACTTTAAACACAATATTCAGTTCAATATTTAGAATGTATTTTTATTTCCGGATGAATGTAACAAAATTATACTTTGTGTAATCAGCTGTGTTCTTTATTTTTGTCTAAATAGTTACTAGAAATGTACATTATTTTTATCTGCATCGAATACCGGTGTATTTCTTTAATTAATTACTATTATTTTTAATATTATTTATGTAAGAAAATATTACAACGTACTCAAAGTTTAGACAGTCGGTCCTTTTCACTTTCATTCATGGCACAATAGCCAGTAATGATCAGTAAATGAGATATGACTGGATGAATGGGCTGCATTTTCCAGACAAATACTGGCAAAAAAGCAGCCATCATTTCACAATAATGCTCTTCCCATCCAAAGCGACTCAAACCTATTTTTTTCAATAATAAAGGCACTTCGTTTTTTTCTCATGCTAACATTATTAAAAAAATTTAACATTTTACTCTATACTCTTCTAGACATCAGACTTACAAATAACGGACTTTTCAATGTGCTAACAATGACATCATTTTCGATTATTTTTTGTACGGTGAACAACCATCCGCCAAAACCGTTTTCCACGACGATGAAACATCAAATAACAGTAATTCGGTGGTTTATGATCGTCGAAAACGGTGTTAAACGATGGTTGTTGGTCGTGCAAAACGACATCACGCGTTGGTTGACTTTAGCATTGAGTACACAAATTTTTTTTGCTTTTTTTTTTCCTTGGTATTTGAAAATGCGGAACTTGATGCCCTTAGCGAAAGAATGTTTACCAATCCTCATTAAAATGTTAGTTTGTGTATTTATGAACTTAACTAGTTTTTTTAATTAACTTTTGTATTTTCTTTTCCTATAGATGTACAGAACTGTAAAGACTACTGACAGGGCTGCAGCTTCTTCAGGTTTGCATAATATTTATTAATTACTCTCAAATTCAATTAATTAATAAATTGATGTCGAAAGTTGTGATGATATGAACAATAACAATTCCATGTAATGAGTTTTAGTGTGCTTTAATTTGAAACAGATGGCTCCGGGGATGACGATTACTCTACAAGGTTTATTGATCAAGAAGGATTAAATGACAACTTAGATTATACTACATCCAAGACTAATGTTAATTCAACAAGATGGAGCAACTCATCAAGGTAACTAAATATTGATCATGTATATGTTTTCAAGAATTGACGTGCTTTCAACAAGGATTAGGCACAAGAGTAGATGCAGATGTTATTCCATATGTGGATCTTGTTTAAGTTTTGAAGAGAAGTAAAAACTAGAGAGAAAAGAATGACCTGCAAAATGAACAAGAGCAAAATTTAAATGTACTTTAATTTAAATGTACTTTAATGTGTATACTAGGTAACAGGTAGTCAGGAGTGGCACACAATACCCCCTTCAGAGCACACACTAAAAAAAAAAAAAAATTAGAGATTTATCTTTTGATGATTCAAATCCTTTGGCTTTCGTGCATCATCACTCAGCGGTACAAAATCATAGCTCAACAACTCATCAATTAAGTGTAAGTCGACTAATATATGTCTACAGTCCACTAATTAAGTGAAAAATAATGTTCAGTTGTCTCTAAAAAAGAATGATTATTGCCTCGATATATTTATATACAGGGCTTTCAATGAGTAGCCAAAAAATCCAAAATCCGGCTGCATTCGTATTCTAAAATGAAAATTTTTGATATCCAAAAACGGATACAGATGCGGATATGACCATATTCATATCCAATAACTATACGTCCTGTTTTTATCAAGATTATAGTTTTTTTCTGATATTTTAACACATAAAATGATTGTTTTTACTAATTTATTTCAAAAAATTTTTTCCATGTATATAGCAATCGATGTTTGCTGGTTAACATTATTTTTCTTAGCGTATTTTATACCTTTTATAGTCTTGGTACCGAAATGGATTTATAATAAATCAAAATTTTGTATCTATTTGTTTAAATTAATTAGTTGTGAACTGATCGAAAAATATTAGATAAATATCTGGTATCTGGTACGATCATCCGTGCAAACGGATATTCGTTATTTGAAAATAATTTCGAATACAGATATGACACTATTTGAATCCGTATTTGACCGTTTACAGATCTATTTGTAGCCAGCATCTACTCGGTGTTCTTATTTTGAAATGATTCTACTACTAATAAATACAATATTTTATGGCCTACAGTTTGTTTGATATTTATTAGTAGAAACAGATACTAGTACAACGTGTAATTTCTCCGATATTTGGGTCGTTTATTGTCAATGCTCAAAATTAGTCACAATTTTGGCATCATGCCCTTGTTTTAAGAGCCTGGACACATATAACCAAAAGGCTAACCCTTTCTGTTGACTTAAGTCTTCTTCCCATTTTGATTTACTGCATATTCTATTGTTTTGGTCGGACAGTGTATTGATATCTTGGAGTTTGATTTGTTTTTTTGCTATTAAACTGAAGTAATTTAGTATTTAATTTCATTGCATATTTGCATGGTTGATTGGATTAGATTCCAGCAATGTGTTTTGACCTGACATGCTTCATGCATGTAATAAAAAGTTACTTTATGCTTTTTTAATCACTGTCTCCACTGAATTCCCACTATTTTCACCTGACATGCTTTTAAATCACTTCATAGTTTTACCAGTTCTTTTCTTTTGTTTTTAATTTTTACCTTGTAAACAAAGCTAAGAGCGATTACTACATTAGTGCTCAAATGGTTAATATGAAAGTTTCAGTTTGCTTTTTATTCTCCATTCAGTTGTAAACTCGTCCATATTTCAGCATATTTCTTTCTTTGTTGTGCAATTGATTTTCCTGTTTAGGGCGACTGGATTTAGTTTTTTCCTTTCTTTCTTTCTAATGATTTATGATTAACAAATTATTTATTTCAGCAAAACTGCAGCATGGTTGCATACAAATTCAAACGTCGACTTAGATGGGGCCAATCAAACATACATTTCATCCCGAAATTCTCAGGTGATTATTTACTAAACGAATTGATATTGGCCTCCATTTGCACGCCTATACTATTCATTTAAACCAAATTCTTTTGACACCATTTTTGTCACCAAAAAGTTGTATAATATCAGTATCAACAGTCTGAGAAATGACCAACTCCTTACCAGTTCACACCCCTTCTAGTTCTCTCTTCTTCGAATGCTCGCCCCTTTTCAATTCAAAGGTTGTGCAGTAGTAATAATAATAGCACGGGATTATCTGCATTTTGAATCGGGCTTAGAGACTAGCCTAGGTAATGCTGTGCTTCCATCTTGTACATCCTTAAATGCATAATGGATCACGGCACGCCTATAGAGGAGAAGATATACATTTTCTTGATCAGTGTTTGAGCATTTTTGAAAGCCCCAATCAAGTATGAATTCCACAAGGAACACTGTTTCTAAGTCTTTAAGCTATTGAATGGCTTGGAGACTTTTATCCTTGATTGCTTCATTCGACACATTTGTGGAGCCTTCTGATCTTCTGTATCACAAGGGAAAGGTGCCGCGTTTTAACGTACATATTGTGATCGTCGTGTTTACATAACTGTCGGAAGGATATGACATTTTCTTTAAGACTAGACAACGCAGACTTCACTTTTGCCAAAATCCTTCAGTAAAGTGAATGCAAGTAGGGATAAACGTTTGATTGGTTTAGTTTATCTCATGATAAAAAATTGTTAAATCGAATTAAAACCAATAAAAATGAAACCAAACCAACGAAATTAAATTTGATTGGTTCGGTTGGTTATCCGATTTAACCGAAATAGAAATATTTTATTCTTTGTGTTTGGATTATTAATTGTAATTTGAAATAAAATATAAATATATAATTAAAATATTCTTATTTATCATTCTTATGCTTTCTAAAAGTAATTTTGACACATATATGATAAATAATATTTATTTTGATCGCTAACCTAATCTAAATTTTTTATTATAACATCAATATTTTTTAAAATATAATAAAAGTTTGGTTAATTTGATTAAATCAATAATCAAACTAAATTTTTTTACGGACCGATTATAAACTAATCTAGTTTCAAAATCAAACTAAACAAACAAAAATGGTTCGATTCCCAGGTTGTCCATTTAAGGGCTTACCATGTGCGTATGCTAAGATCAGCCTTCGGGTGCCCGCGGACCGGGTAGGCGCACTAGGGAGGGTTTTACGGCTCCGGCCGGTTTCCCTCCTGAACAAATTCAAAAAAAATAAAAAAAACAAAAAAAAAATAAATTGATTTGATTGGTTTATTTGGTTTAACCAAATAATGCTCGCCCCTATATGCAACATGAGATCGCAAGGAAGATCATGTTGTGACTAGCTAAGTCGGTTCATCCTTCCCGGTCCCTAGTGGGATGTCATTTTTTATATGGAAAAATGCTACTCTTACGTACAAAATTGTAACTAACATTTACTTACATAAGAGAATTGATTATGTAGACCGCATAAGTATGGTGGCTTTAAGTGTTAAAGGAGCGTAACATATATCAAGCTTTTTTTGGTTAGCTCCAAGGCTACTTATGCCCAATGAGAAGTTAAAATAGTAACAAGGTTCCATAAATTTTTTGCCAACTATTCAAAGTTCATCTCTTTATTAAATTTTAACTTTTTAAAACAACTCCCTTCAACTTTTATTACCCTTAGCAAATCGTTTCTCCATTTTAATACTTTTGTTAAATATATCGATCAACCAATAAACATATATACAAATATATACAATATCCACATCACAGGTTATCTAGATATAGTTATAAAGTCACATGGTCATATCGTACCACCAAAAACATTTCACAAACATAAATATACTGTTTAATAGTTGATTAACAAATTAATTTCCTTGTTTCAATCGACGTCGCAAAATAACTTTCAAACTTAAATTCAAATTAAAATTTTAGTTCCCATTTTACATTAAATAATATTTAGTTGAAACTCTAGAAATATTGTTTAAATAATATTTTCTCTTCAAACGACTTCACTCACCGATCAGATTCGTAACTATAACTTTCATCAATGGTGGCTGACTTCGATACTGCTTGTAACAAACTCAATTAGGTAGAACTGACTCCTAAAGACTAGCTTATAAGAAGAGGGTGCTTAATAAATTTTATACGCATGACATATCTCATACTAGACGATGTGGGACATAACACTCTACTATCAGTTTTGGGTCACATAGCGAAAACAATGGGCAAAATTACAAAAAATTGCATATATACTAAATCTATGTCTAATATTTGTACTTGATGAAAAACTACATTGATTGCTGCCTATTTAGACATACAATTCCTAATTATTAACAAATGTATAATGAATAAATGAGCAAAAAATAAAAGGACATACCTTTCTAGCTTGTGGCGTTACAATGAAGAAATGAAACTACGATTAGTAGAGATCCTATTATGATCACCTTTACCACCAGTAATTTTACAAATGATAGAATCAAGTTACGGGAATTGCGCCTTTACAAAATTGAATATCTTTGAATACTCTGCAAATACCAAGACGAAAAGATTTAATATAAATTTTCCATTCCATATCTCATTCTACCCGGATCTCATTAGTAATATTCCTTAATAGCTGCTATCGATCAAAAGGTTGTGATATGTGTGATAACCTCCTGAACGGATTTAACAAAAATTGTGTACTTCCATCCTAACCATTAACCATATGTATAACTTGTAATATTTTTGATAATAAGTACCATTAAATGATTTCTCCTTTATTTTATCTCATATTACCTTTATACTTTAATAATGAGCATAATCATACTGTTTTTTCACTTTAGCTTGATTCGTTGACATTGAAAGTCTAGTTATGAGACTCCACGTGTGATTTGTTGACCACTGAAAGTCTATCTATGAGACTGAACGTGTAACATTCACTTCCTAAGGAGATTTAAGAAATTTAAATAGTAGATTCAATGTGTACTTTGTTGCTGTAAAATAATGCGTGCAAGTTTTACTACTTACAGATCATCCGGATGAAGCCTGATTTCAATCTATCATAGCACGCCTTTAAACAAGAATATGTTTTGCACATTAACACATCATCACATTGATCACTTCATTATTACCATACAATGATGACATTTAGAATGTAGTCTTAGCCCAATAATCAAATAAAGTAATTTTCTACTTGTGAATTAAACCTTAGAAGTCACTGTTTTATCCGATATTATTGATCGATCAACTTGCATCACCTTGCTCAAGGATTTCGTGACTCCAAGTTATGTTATAAATACAATAACATGAGACAAATGTACACACACGGACTAATTTACATAATTGTGAAAATTGCAGAATTACTCATTCATAACTTTAATGAATACTCACAGGGTATGCGTTCTCCCTCCATTTCTTCCCTTTCAATTCCTTTACATTAGTTTCTTTATTTTATTTTTCATCTTCATTTATTTGTAATAGATTTCCCTTCGTAGATCCTATGTTTTAGGTCCACCGATTATTATTGCTTAAGAAGAAGAATCCTGCAAATTGGACACTTTCATGGCTTTAATAGCATATTTATGATCAAGACATTTCTCCAACATTAGGAGGATGAACGGAGATAATTAATTTCCCACTTAGACTAAGATCTTCTGGCCACGCTTAGATCACCCATTTCTTCTACTTACATTTAAATATTTCTTGAATTCTATACCAATTTTTAATGGGCATTAATTTTTCTCCTTCACAGTTTTGCATTTCCTCTTCTTTTAACTTTTTATTTATTTATTCTCTTCTTAACCTTTGTTATATGATGTAAAAATTAGATAATGACTTGTTTAGTTTTATCACATTTTATTAGTAAGTATATTAATTGTTTATCATATGCAATAAAAACTATATAAGAAAAGTTCATGTGTATCAATAATTATGAATCATTTATATCTCTTTTTCTCAATATGCATACTAATAATATTTATTACTTTGCCACAAATATTTAGTCCTGGTCAGAATTAGATATTTAATACACACGCGCACGAAAACACATTTCTAAATCTACTAGTTGCAATGTGCAGGATGTCACCGAAAATTTTCAATCAACACAGCTCCCAAAATCTCATCAGGAAATGAAGAATCCTAGCCTAGAGTTTACACTTGGTAGACCAGATTGGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_022853840.1	2.5e-48	transcription repressor KAN1-like isoform X1
Swissprot	Q93WJ9.1	2.6e-42	Protein KANADI 1
trEMBL	A0A8S0TXP8	1.8e-48	Transcription repressor KAN1-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G16560.1	47.67	5e-48	187	KAN;KAN1	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g516442	AT5G16560.1	258	107	9	42	279	151	400	47.67	5e-48	187
g516442	AT1G32240.1	202	77	4	95	276	192	386	48.51	9e-39	157
g516442	AT4G17695.1	241	112	6	60	278	91	319	39.42	2e-34	143

Ortholog group

Species	Genes
Allium cepa	g236625.t1; g516442.t1
Allium fistulosum	AfisC1G03581; AfisC3G00806
Allium sativum	Asa2G00726.1; Asa7G05238.1
Arabidopsis thaliana	AT5G16560.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	115	166	28.1	1.5e-06

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0001708	P	cell fate specification
GO:0003002	P	regionalization
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0007389	P	pattern specification process
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009798	P	axis specification
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009943	P	adaxial/abaxial axis specification
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009955	P	adaxial/abaxial pattern specification
GO:0009956	P	radial pattern formation
GO:0009987	P	cellular process
GO:0010051	P	xylem and phloem pattern formation
GO:0010158	P	abaxial cell fate specification
GO:0010229	P	inflorescence development
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0035670	P	plant-type ovary development
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045165	P	cell fate commitment
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048440	P	carpel development
GO:0048467	P	gynoecium development
GO:0048481	P	plant ovule development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065001	P	specification of axis polarity
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network