result

Gene information

Detail information of g517106

Location

Gene	Chr	Start	End	Strand
g517106	Scaffold_90199:HRSCAF_473285	318777	319844	-

Sequences

CDS

Protein

Gene

>g517106.t1
ATGTCTTTCAGTGGAACCCAAGACAAATGCAAAGCCTGTGACAAGACTGTGCATTTCATCGACTTGTTGACCGCAGATGGTGTCAATTATCACAAAACTTGCTTTAAGTGTAGCCATTGCAAAGGAAATCTAACTGTAAGCATTTTTGATACATTATCGTATGCATATTTCACCTTCTCCAAATATTTATATATTACAATGTATGCATGCATGTTCCCTGTCTAGATGAACAGCTACTCATCCATGGATGGTGTTCTTTACTGCAAGCCTCATTTTGAGCAGCTTTTTAAAGAAACGGGATCTTACAGGAAAAACTTCCAAGCTCGTAAGTGCTCGTTGTATGTTTGCGCAATCTTTTTACTGTTTTATAACAATTTATGTGTTAATTATGGTATTTCTTTTGTTGCCCAGCGCCTAAGTCCGACAAAGAATTGGTAACGTTTCTACATATCAATTTGCACACTTTGGTATAAAAGTTTAAAATCAAGATTATAAGAATGACTTATAAGTTGCTTGCAATTCACAGAATAGGACACCGAGTAGAGTACAGTCCATGTTTTCTGGCACGCAGGACAAATGTTCAGTTTGCACCAAGACAGTATATCCTCTAGAAAAAGTGAGTTCATCTTAGTTTTTTCTTAAAATGAAAACAAAAGTGAACATGTAAACTTCTGGTGCATGTGCGTACATATCATGCACAAGATTGTGTGGTAATGAAACTAATATATAGATAATGCGGTGAATGAACAGATAACTGTAGAAGGGGAAAACTATCATAAAACGTGTTTCAAATGTGCGCCTGGTGGATGTACATTAACAACATCCAATTATGCGGCATTAGATGGAATATTGTACTGCAAGCATCACTTTGCACAATTGTTCAAAGAGAAGGGAAGCTACACTCACTTGACCAAAACTGCTTCTATGAGAAAGCATTCGTCGGAGGCAGTTGTACCGCCAGAAGTGGATTTGACAGTGCCATTGCCAGCAGAAACTGAATCTGAAGCAGCCTCCGAGAATACCGAGACAGCAGCGGAGACAGCTGAGACGGCTGAAGAACAGTCATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008796793.1	1.9e-83	LIM domain-containing protein WLIM2b-like
Swissprot	Q9M047.1	1.9e-77	Widely-expressed LIM protein 2B
trEMBL	A0A8B7CDD5	1.3e-83	LIM domain-containing protein WLIM2b-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G55770.1	70.72	7e-76	280	WLIM2b	GATA type zinc finger transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g517106	AT3G55770.5	181	49	2	1	177	1	181	70.72	7e-76	280
g517106	AT3G55770.4	181	49	2	1	177	1	181	70.72	7e-76	280
g517106	AT3G55770.3	181	49	2	1	177	1	181	70.72	7e-76	280

Ortholog group

Species	Genes
Allium cepa	g517106.t1; g96715.t1
Allium fistulosum	AfisC1G04443; AfisC8G03414
Allium sativum	Asa1G01861.1; Asa7G04930.1
Arabidopsis thaliana	AT1G01780.1
Oryza sativa	LOC_Os10g35930.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00412.19	LIM	Domain	10	65	47.4	1.5e-12
PF00412.19	LIM	Domain	104	159	41.8	8.5e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003674	F	molecular_function
GO:0003779	F	actin binding
GO:0051015	F	actin filament binding
GO:0051017	P	actin filament bundle assembly
GO:0030036	P	actin cytoskeleton organization
GO:0007010	P	cytoskeleton organization
GO:0005488	F	binding
GO:0006996	P	organelle organization
GO:0007015	P	actin filament organization
GO:0008092	F	cytoskeletal protein binding
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0022607	P	cellular component assembly
GO:0016043	P	cellular component organization
GO:0030029	P	actin filament-based process
GO:0044085	P	cellular component biogenesis
GO:0044877	F	macromolecular complex binding
GO:0061572	P	actin filament bundle organization
GO:0071840	P	cellular component organization or biogenesis
GO:0097435	P	fibril organization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09377	CSRP; cysteine and glycine-rich protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network