result

Gene information

Detail information of g518521

Location

Gene	Chr	Start	End	Strand
g518521	Scaffold_90365:HRSCAF_473451	8920	12093	-

Sequences

CDS

Protein

Gene

>g518521.t1
ATGAGCATGAAATCGAATCTGTCCGTTCAAATCCAGTTCCCAAACGACTGCTACGACAGCAACGTGGGGGAACTGTTGGAGGAGTTGGACGATGGATATGACTTGGGGAACGATTTGTACAGTGGAGATGAGTTCAGGATGTACGAGTTCAAGGTGAGGAGGTGCACCAGAGCCCGGAGCCATGACTGGACCGACTGCCCGTTTGCTCATCCCGGGGAGAAAGCACGGAGGAGGGACCCTAGGAAGTATCAGTACTCGGCCAGTATCTGCCCTGATTATAAAAGTAGGGGTGGGTGCTGTCCTAGAGGCGATGCTTGTGAGTTTGCTCATGGCGTTTTTGAGTGCTGGCTTCATCCTGCCAGGTATTCATCTTTTTTCTATTAAATCATTAAGTATAGAAATTAGTCTTGATAATTTCTTTTTTACTAATTAATTAGTATATAGCATGTTCATTGGGTAGAAGAACATACATGTTTTTTTTTATGGAGATAATTAATGGAAAAACATTAGCATAATTGATGTCTTACCTAATTTCTGCCTTTTTCTTTAGTTAATCTACAAAAATTATTATACTATCGTATTCATCCACTACTTACTGTAATCAAATATTAATTTTAAGGTAATTTTTTATCATGGATAATTATGCATGGTTGTTTTATCCGATTATCGTAATTTTACGCTAATATTGTAGACATAAGAGGTATTATAGAGATAAATTATATTTTTACCCTATTATATTATTTCATTTTATTTTTTAAAATAACTACAGTCTTTTCCACTGTAATTTATTTTTGAACCATACAATTGGATATTTAGTAATTAGATTTTTGACTTGTAATTAATGGTTAAAGAACAACTAAATATTTGAAAATTTTGATTTAACAGTTCAAAATCCGAATCAACTAAGAAAATATGTAAGGCCATAAATTGTGATTTGGGTAGTTCAGTGAAAATCAGATGGTCATAATAATAAATATATAATTTGTTTCGGTTCATCCATGCATTGTTCATTGCTCACATATGAGGATTAACTTGCAAAGTTTGCCGATCATGAAATTACCATAAATTGCAGTACACCACACATTTATTTCTGCAAGACACGCCATTAGCTTGGGATACCTATTGTCAGTGACATTTCTAAGTGCATGTTATGGGGTTTAGATTGTAGTACACCACCTTTTTTTTTTGTTTTAACATGAATGTTGCTAGCTTGGTGTTATGTTTCAAATTACTTTTTATAAAGGACTTATATTAATTCTCTTTTAGTCCAGTTCTAACAGATTACACCTTATATGCAGATGGGGTTTGTGCGAAATATATTGCACATTATTCTAGTTCAAAATTTGGAATTTTTTTTTTTTAGAATCGGTCCCTGATATTATTCATAATGTAGAACTAATTCTCATACGAACGCCAAATTTTCAGATCCATGATCTTAATTTTCCCACTAAAATTTTCAAAAAATTGCATTTTAAAATCAAATAAATTATAGGAATCAGCAAAAAGTAACCACATGTGGAAATTTTTAAAAAGCAATCACAGTTTTTGCAGTTTTTGAAGATGAAAAATGCGTGCCATTTGGATTATTAAAAATTGCAAATTATATGCAATTGCAAAAATTTGAAGTATTGATTGATTTATGTCTTACACGTAAATAAAATTTGAAATGAAAAGGAAAAACATATTCAAAAAATGTAGATACTACGTATTTCTTGAAATATACAAAAAAAAAAGATTAAAAAAATTATTGCAAATTATTTGTAAAACTTAGAATATAACTGAAATTACATAATATATCTACAAAAAATATAAAAATGAAAAATAAAATTCGTACGTACATAAAATAATATCTAAGTTTAAAATATATGTAGTTGCATAATCTATATATTAAAGTATAGTGGTGCAAAAAAAATCTTTTCCGGAAAATCCCTATATTATATATGTGTTCCCAGAAAGTGCACAAGGAAAATAAAATCAAAATCAAAGTGCAGTATATATGTAGTTGCAAAATTAATTGTTTAAAGAAATACAAACATTTTTCATGCAAAGCGATGAAAATTTTGCACATTTTTAAATGATAGAACATTTTTCGTTTATTGAAAATCTAAAAATTATGTAAACATAAAAATTATTCTGAGAAAATTCAAGTGTATTTTGCAATCACATACTCTATATATACACCATACTTGAAGTTAAAACATTTTTCACTTATTATAATATAAATAATCATGTAAACATGAAAAGTAGTTTGATTTTTTTTTTTTCTGTACGATCAGCAATCACTTATTTACTCACGTCACAATTAATCAAGTAATTAATTAATTTAAAAGGAAATAAAGCTACAATGATGACATTTATACATTTTACTGTAATTATATATAGGATGACAAAATCATAAATTGCTACAAATAATGACATACTAAATTTGTAAATTGCAAAAGAAAAAAAAACTGCAAATCTGGGCCGTACGAGTGAGCCTATTGTCCAGGGCAACACCCAAGATTGCAACCCGTCCTTACTTGAAAATATTGAAAAAGATCACGGTAGTCTAATGAAGTAAATGTTTTGTAGTTATAATTTTGCATTTTAATATAACTGAAAACTTACTACATTCGATTTATTATCGCTATCTATACTTACTTCCAAGTATAATTATACTTCAAGTATAATTATTATTTTCTTAAACCAAAGAGAGTATGTTTGTGCTTTGTGCTTCGTTTGAGGGCAACTCGAACGATAGAACCGGCACTAACTAGTCTCACGACATTTTGTTCCGAGTTCATATTCAATGAATGATTTATGTATCTTAAACTATGTAAATGATAAAAATATATTCTTTGCAGGTATCGCACAACGCCATGCAGAGACGGCAAAAACTGCAGGCGAAAAGTCTGCTTCTTTGCGCACACACGGCGCCAACTAAGGCTCCTCCCACAAACTGCAACTTCAAATTCACCACTGTCTCCCACAGTGTACTTATCACCAACTTCAGTATTATTTGGATTCAACCCCTCCCCACCTCCTCTTTCCAAGAGTAGAAAAGCCAAGTACGACCAAATGTTTGAAAACATCCTTAGTCGGTTCAAGGGCATGGAGATGTCTCCCATAAGGATGATCCATGACAATGAACCGGGTCTCGAATGGATTGAAGAGCTACTGCAGGAAGAAGTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	THU75050.1	5.3e-57	hypothetical protein C4D60_Mb04t39820
Swissprot	Q9ZWA1.1	8.3e-55	Tandem CCCH Zinc Finger protein 4
trEMBL	A0A834VY88	5.9e-58	Zinc finger CCCH domain-containing protein 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G03790.1	63.76	3e-53	205	AtTZF4;SOM;TZF4	Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g518521	AT1G03790.1	149	43	2	36	174	74	221	63.76	3e-53	205
g518521	AT2G19810.1	137	39	2	32	164	66	200	67.15	4e-51	197
g518521	AT2G25900.2	136	47	1	37	172	83	216	63.97	5e-51	197

Ortholog group

Species	Genes
Allium cepa	g341123.t1; g518521.t1
Allium fistulosum	AfisC3G04661
Allium sativum	Asa2G03858.1
Arabidopsis thaliana	AT5G07500.1
Oryza sativa	LOC_Os05g45020.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	88	111	23.3	3.8e-05

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010029	P	regulation of seed germination
GO:0010187	P	negative regulation of seed germination
GO:0010468	P	regulation of gene expression
GO:0010494	C	cytoplasmic stress granule
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032991	C	macromolecular complex
GO:0035770	C	ribonucleoprotein granule
GO:0036464	C	cytoplasmic ribonucleoprotein granule
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0048519	P	negative regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051093	P	negative regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1900140	P	regulation of seedling development
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1990904	C	ribonucleoprotein complex
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network