result

Gene information

Detail information of g519661

Location

Gene	Chr	Start	End	Strand
g519661	Scaffold_90498:HRSCAF_473584	354613	357210	-

Sequences

CDS

>g519661.t1
ATGATGCATGGGAATGTGAATGGTGGAAATGGATTGATTGAAGATAATGTTGATCTTGAAGTCGATAACATAAACTTTTGGGCTAATCTTGGTGTAACCCCACATGTCAATCCAGTCGATCCTGTTCATCCAATTCAATCCCATCATCACAATCATAGTCACTATCACAATCAACATCATCACCAAGAGTCAATCGAACCACAACTTGAACTTGTAGAACAACTAGTTAGAAGAGAGTTGTTTGAAGTTGATTGTGATCCAAGGCTTGAACCATTTATAGGTATGGAATTCGATTCTGGTGAGGCAGCCAAAACCTTTTATATTGCTTATGCAGGCCGGATTGGGTTTTCTGTTCGAATTGCTCGATCACGTAGATCAAAATGTAGCGAATCAGTAATCATGCTTCGGTTTGTTTGTTCAAGAGAAGGATTCAGTCGTGAAAAGAGAATCATTGCTGGTAAGAAGACAAGAAAAAGAGCCGCTTCTATAAGAGAGGGTTGTAAAGCGATGCTTGAAGTAATTCGAAGAGCAGATGGGAAATGGTCAGTTACGAAACTCATAAAAGAGCATAATCATGAAGTCGGAATGCCAAGTAGAGTTCATTATATAGCTACTGAGGTAGAAGGAGATATGGAACCTTATCTTGGCATGGAGTTTGAATCTCTTGAGATTGCAAAGACATTCTATTATGTTTATGCTAGTCGTGTTGGATTTGAAGCACGAGTTAGACAGTCGCGTCGATCACCCCACGATGAGTGTCTTAAAATGTTGAAATTGGTCTGTTCAATGCACAAATATCATTCTGGAAGAGATAATAATGGTGAAGATAGTAGAAGGCTGATCCAAGATACTGGAAAAGAAGGATGTGATGCATTATTTGAGATAATCAGAAAAGATAACGGCATTTGGGTGGTTTCTAAGCTTGTTCTGGAGCACAGTCATGAGCTGATTCCATCACCACCCAGCAAAGTTAAATGTGTACGATCGCAGGGAGAGATGCTTGTCATCGCAAAGAACTTTTCCGACACTCGAAACCTTTTATTAAGTGGCCAAGACTCGCAAAATTATCTCCGAGAGGTCAGGTACAATGATTTAGGACCTGAAGATGCTCAGGATTTTCTTGAATATTTGAAGAAAGCACAAGCGGAGAATCCCACCTTTTATTATGGGGTTCAAGTTGAGAACAATAATGTAATGACCAACATCTTTTGGGCTGATGCAAAAGCTCGAATGGATTACAGCTATTTTGGTGATGCTGTAACATTTGACATGACATTTAAAAACGACAAAGAAATGATGCCTATAGTCACTTTCAGAGGTGTCAATCATCATGCACAGCCCATAGTTTTTGGATGTGCCTTGCTTGTTGATGAGTCCGAGACATCATTTATTTGGCTATTCAAACAGTTGCTGGCAGCCATGGATTCTAGAGAACCAGTGTCATTAATAACCGACCTAAATAGAGCAGTTTCTAATGCAGTTGCTAAAGTTTTTCCAAACACCCGCCATTGCTTTTGCAGGAGGCATATCTTGAACACTATACAAGATGAGTTTGCAGATTTATTTTCACCGCATAATCTTTTCCAGGAGGAGCTTATGAAATGCATTGATGAACCAGAAACATGCGAATCTTTTGAATCTTGCTGGGATGCAGTGCTTGATAAATACGACTTGAGAGACCATACATTATTGCAGTCTTTATATAACATTCGCCATCAGTGGGTGCCTGTATACATGAAAGACACGTTCTTTGCAGAATTAGATGTTTCTAGGAAATCAGTTGACCTTGACGCTATTATTGCAAACTGTTGTCATTCAAAAAATTCATTGGCACTGGGCATTAAGCAACTTGGACTAGCACTTGCAAGTACGTACGAAAACGAAGCTCAAGCAGACTTCCTTACAATGTTCGAGAAACCATATATTAGAACAGCTTCACCACTTGAAAAGCAAGCGGCTGGCATATACACAAGGGCATTGTTTGATAGGTATCAGGAAGAATTCTTAGAAGCCCTTGGTTATCACGTGAACAAATATGATGATGGAGTAGCTACTAGGTTTCAGTTGACAAGGGACGATGGAAAGGATATGTACACGGTCACGTTTAGTGCTTCTGAAGTTAAAGTTCATTGCAGTTGCTGTTTGTTTGAAGTAGCAGGCATTCTTTGTAGACATGTATTAAGAGTATTCATAGTGAGTGGTGTACGTACGCTGCCAAAAGAATATATATTGAAGAGATGGACAAAACATGCAAAGAGTTACAGTGTAGGCGATGAATGTGGGGTGGAAATTAGAGGAAGTAGTGGAGAACCCACGTCTTCAAGGTATAATGATCTTTGTAAGGATGCCATTCGATGTGCAAGAGAGGGCTCTACCTCTGGTGAACTGTATAATTTGGCAAAAGATGAACTACAGAAAGTTTTTGCCCAAATAGTTACAGTAAAGCAGAAAAGAGAGCAGCAGTCGTTGGAAAGTTATATGAAACCTCAATCTAAGCACGCAAAAAGACATGGTAAAGTGATGGTGAAAAAAGATTTTTCTAGCAACAATGTGAAGAGATCAGGGTCGAAGTTATCAGCGGAAGATGAATATAGGTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241601.1	0.0e+00	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	4.0e-126	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A8B8J275	0.0e+00	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	38.27	1e-126	451	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g519661	AT4G38180.1	635	363	8	210	819	70	700	38.27	1e-126	451
g519661	AT4G38180.1	115	56	2	89	201	71	184	48.70	9e-19	92.8
g519661	AT2G27110.2	631	339	10	209	817	45	641	37.40	1e-118	424

Ortholog group

Species	Genes
Allium cepa	g228875.t1; g415141.t1; g457546.t1; g481319.t1; g481320.t1; g505241.t1; g519661.t1
Allium fistulosum	AfisC1G02521; AfisC1G05889; AfisC1G05909; AfisC1G06551; AfisC2G06359; AfisC3G06359; AfisC4G01117
Allium sativum	Asa2G05399.1; Asa7G02936.1
Arabidopsis thaliana	AT4G38180.1
Oryza sativa	LOC_Os03g45300.1; LOC_Os03g50900.1; LOC_Os06g39680.1; LOC_Os06g49550.1; LOC_Os08g06930.1; LOC_Os08g06930.2; LOC_Os11g14020.1; LOC_Os12g12380.1; LOC_Os12g12380.2; LOC_Os12g12380.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	106	194	85.4	3.2e-24
PF03101.12	FAR1	Domain	228	318	58.7	6.3e-16
PF10551.6	MULE	Domain	420	511	86.2	1.5e-24
PF04434.14	SWIM	Domain	698	731	29.1	5.2e-07

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network