result

Gene information

Detail information of g520733


Location
GeneChrStartEndStrand
g520733Scaffold_90620:HRSCAF_4737066714774453+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020265511.19.5e-108chromatin remodeling protein EBS-like
SwissprotF4JL28.16.2e-96Protein EARLY BOLTING IN SHORT DAYS
trEMBLD6MKD61.4e-108Transcription factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT4G22140.175.934e-98 353EBSPHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag520733.t1
Allium fistulosumAfisC4G04764
Allium sativumAsa5G04059.1
Arabidopsis thalianaAT4G22140.2
Oryza sativaLOC_Os08g32620.1; LOC_Os09g21770.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF01426.15BAHDomain2313588.72.2e-25
PF00628.26PHDDomain14018840.71.5e-10

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0003690Fdouble-stranded DNA binding
GO:0006333Pchromatin assembly or disassembly
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0005677Cchromatin silencing complex
GO:0031497Pchromatin assembly
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0006323PDNA packaging
GO:0006325Pchromatin organization
GO:0006338Pchromatin remodeling
GO:0006342Pchromatin silencing
GO:0006355Pregulation of transcription, DNA-templated
GO:0006996Porganelle organization
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0022607Pcellular component assembly
GO:0016043Pcellular component organization
GO:0016458Pgene silencing
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0017053Ctranscriptional repressor complex
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031507Pheterochromatin assembly
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032991Cmacromolecular complex
GO:0040029Pregulation of gene expression, epigenetic
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043565Fsequence-specific DNA binding
GO:0044085Pcellular component biogenesis
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044464Ccell part
GO:0045814Pnegative regulation of gene expression, epigenetic
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070828Pheterochromatin organization
GO:0071103PDNA conformation change
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090568Cnuclear transcriptional repressor complex
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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