result

Gene information

Detail information of g520811

Location

Gene	Chr	Start	End	Strand
g520811	Scaffold_90625:HRSCAF_473711	924593	931056	-

Sequences

CDS

>g520811.t1
ATGGGCCCTAATTTAACATGTTTAACAAAATTAACAGTTGCTGTCAATGTATACAGATTGCGAAAACTCGCATACCGTGAAGAGCGGAAGCAGGGTTGTTGGGGAGGAGCAAAGGCGAGGAAATGGAAAACGAAGGAAGTGGGCACAACACGTGATGGAGCAGTTATAGACGATGAGGTAAGGGAAAGGAGAATGGGAAAAGGAAAAGCACGTGAGGGAAAAAAAAGCGGAAGCGAACGTACCACCATCATATATATAGCATCCTTCTCCCTTCCAATTCTTTTTCTTGTTTCTGAACATAGAGCTTGTTTTATCAACATATATCCGCGAAGCAAAGAAAGATACTATACGAATCATAACCGAAACATGGAGATGAAAAAGAGCGCGACCATCAGAAAAGTTAATGGCGTGAAAGAATCAACGAGATCTGATAATGAAAATCCTGGAAAACAAAGAAAACGGCGCCGTGGAGAATCAGTAGAAGAAATCCTTAGAAACTGGAAGGAAAAGAACAAGATAAACGGCATAAATGCTACATTAAATGATAGAAAAGTGCATGCAAAAGGGTCAATAAAAGGGTGCATGCCCGGAAAGGGAGGTCCATTAAATTCTACATGCACATACCGTGGAGTCAGACAAAGAACATGGGGCAAATGGGTGGCTGAGATCAGAGAACCGATTCATGGTAAACACTTATGGCTCGGTACTTACGGCACCGCATTGGAAGCTGCCCATGCTTATGACTATGCTGCTAGAACCATGTTCGGACCCAATGCTCGTGTTAATTTTCCTGATAATTCATGTTCTTTAGAGTCCAACGCTGTAAGTTCAGAGATTCAGGGTTCAGTTGATCGGAAACCAAGCATCGATCATGATCGGGTGAACGAAGTGTGTACAGATGATTCGTGTTCTTTGAAGTCCGATGCTGTTGGTTCACAGAATCAGGACTTGGTTGATCAGGAAGTAAGTTTTGAGCTTGATCAGATGATCAGCCTGGATGATATTTTTGAGACCATAGATATGAACTCCGAAGGCAACAATATCGACTTGTTATGTCGATCTCTTTGTTCACCGGTTAATGAAAATGGGAATGTGGATATGGTTTGGAACTCAGACTATGTGGAGCAAGAACTTGTAGATTTCGATTATCGAGCACTGTATGAAGGCATGTTCAATTATGGTGCCAAGGACGATGGATTGATGTATGAAGACGCAGAGAACTCGAAGAATAAGGAATCCTGA

Protein

Gene

>g520811.t1
ATGGGCCCTAATTTAACATGTTTAACAAAATTAACAGTTGCTGTCAATGTATACAGATTGCGAAAACTCGCATACCGTGGTCGTCTGCTAATTGGGTATCGAAAGTCCCAAACATCAACGGTTTAGCAAGTACAGATTTTTCGGAAGTAGCTGTAGATTTGGCTGGGAAAGACGTTGGTTAGTTAAACGGAAGAAGAGCGGAAGCAGGGTTGTTGGGGAGGAGCAAAGGCGAGGAAATGGAAAACGAAGGAAGTGGGCACAACACGTGATGGAGCAGTTATAGACGATGAGGTAAGGGAAAGGAGAATGGGAAAAGGAAAAGCACGTGAGGGAAAAAAAAGCGGAAGCGAACGGTAGACTGGCATTTTGAAATGAGGAATGGGGAGTAATCCACGTCAGCATGTGGAAGTTCCTGCTTTATTATAAAGTAATAGACTAGTCTTCCTGGTACCACAGTCTGCTTCTTAATATTTAATCACCAAGCCTTTTTTTCCGGTCCATTTCTCGGTTTGATGCAAGCATGGTGTACATGAAATTCTCATCGGCTATCCTTTTATTGTCGAACTTCCAATCTTAGCTCTTCTTATCTTCTTCTACCTTGAAAATTCTAATTTCCAACAAAATCTTAAATTAAAATTCATAATTTAAACGGTTATTGATTGCTGTAGCTATCAAATTTCAACGGTGTTTAAGGGCAAACAAAGCATTACTAGAATTTTAATATTTTATACGGTATTTAAACACCGTGGATATTTAAATTAGACGGCATTTAACCACCATGAATTTTGAAATTGAGCAGCATGTAAACACCGCTTGGACATTGTCATACACGGTAGATTGGCATCGAATAATGATATTATTATTTTTCAAAATAGATTGCAAAACAAAAACATTCGAAATATAACAAAACAAAATGATGTGAGCTTGCGACTGCTGCAAACCACGACCCCTAAAATATGTTGTTGGTAGTAAGAGGCATATGGTATTAAATGTTATGGTATTTTTTAGTATTGGTAGTAGAAAGAACATTGCATGGTGCTCTTAGCATCACACTTAAATTATTCCCCATGAACATCTAAACCACCAATTTTGGTCCTTCCTTCTAGGTATGCTCCTCCAAAAAAAAAAAAACAAATGAATTTATTCGTCTCTCGTAAAAAAAAAAAAAAATGAACATTTTGTTTCAACATGCTCAAATCCATGTTGTTTAAAAACCAAGACTCCATTTGACTTGTCATTTTTAGTTTTGTGTTTTCGTTCAAAAAACGTGCAAACAACGCATGTATTTTTTGAAAAAACAACTAATTTTCAAAATGACACTACCATATAAAATAGAAACAAATTTATTTTATTTTTCATGATTTGAGAAATAATAAAATAATGAAAAAAAATTCATTTGCTCTCCAATTCCTCCGTACCCTCCGCCGTCCTTTTATTCTCGTCGTAGTCTAAAATTTTAAAGTTTTATCCTGTTGTACTCATATTTTGTTGTGAATGTTGAAAAAGGAAAACACAAAATACAAAATGAAACCAAATAGACCCTAAGTCAATTTTTAAATAGATCGAAATTACTAGTGATAAGTTGATTTGATTGCCTTACTCTGTAGGAAAAGCAATCGATTGGATTTACTGAGATTATTACATATATAAATGCCATGTATAGTTTGAATAGTAATAGAACAAACAATCTATTCATACAATAATATGTTCAAAATCAATAAAATTGATCGTATCAGCATTATTAATTTCAAGTGTGTTACTATTGGCATTCAGATTTTTTTTCTTTTGACCACAAAATCTAAAGGCCACCTTAAGCAATTTTGTTTACTTTTTCCCAACACAAATTGCTTTTTCTTCACATGAATGGGCACCCAAAATTCAACACACATATTTCTCTCTTCATTTCAGAATGAACGTCGTCATCAGGGGAAAAATGAAGAAGTCAAGTCGTTTATGTGCAAGCCAGAAGCTCATCGCGTCTGAACAATCTATGCAGTCATCGAATAAGCATCCATTCTTTAATTTTTTTTTATTTTTTTGCAGAACCCTAGGTTTTCAAATCACGATTAAATTGGTCGCAGTTGATTGGTTTGTTGAGGAATTCAAAAACTCTAAACAACTTATTTGTGATTAGACTGTTGAAGGAAAATATACTTTTAACATAAAAAAGGGAACTAATATCTTTGTGATAACTACATTTTGAATTATTTACTAAAATTTCATTTTTCATTATCTATTGGGCAAAAATAGAACTTTTTTTAGGGTTTAGGATTTGAAATTGTTGAGAAGCATGTAAGATTTGTTAAGAAGATATGAAACGTACAACTATGTATTACTCAGTGAAAGAATAAAAGATGATGGTCAGAAGCACATAAAAATATATTAATATCCAATAAATTTATAATGGTGGTCGAAAGAAAAAACTTAATGGCAATAGCAATACACTAATTTCACTTAGCTTTATAACTATGGCGTTCGAAAGAAAAAAAAAACCATAGTTATAAAATTATAAAGCTATTGCTGTATTTTATAACTATGTTTTTTTTTCACTTAGCTTTGCAAAACAATTAATTTTAGTATCTAATTAAAATGGCGTTGACAATATTTCCTTTTTTTTTTTTCCATTTAGCTTTGCAAAACAAATAATTTTAGTATCTAATTAAAATGGCGTTAACAATAGTTCATATGTATACGGTGGAAAAAGGCACTGTTTCAGGTTTTCAGCTTATCTAGATAGAAATTTAGATAAATACAGATACAGGTAGAATAGACTAGCAGAATTATAGTGGGGCCCTCTGAAACCATAAACAAGGTTGGTATTGTGATTTTCCAACGTAAAGACAGAGGGAAAACTTCGTAACCAAGTAAACAAACACGGAAAAGAAAACCGGAACTTTCTAGAAATAACTGGCCGTGTCCACACCAGTACCACCATCATATATATAGCATCCTTCTCCCTTCCAATTCTTTTTCTTGTTTCTGAACATAGAGCTTGTTTTATCAACATATATCCGCGAAGCAAAGAAAGATACTATACGAATCATAACCGAAACATGGAGATGAAAAAGAGCGCGACCATCAGAAAAGTTAATGGCGTGAAAGAATCAACGAGGTACTTGAACAATCATTTTTCACTTTATTGCTGATTTTTTATTTTTTGGTGAAAAAATAAGAAGAGAGTTTAATTTGATGGTATTTGATCTTTTGAACTTCTACATTTTATGTTCTAGAAGTATCTTAAATTTGTCTAAAAAGCAACAGCACCATCTCAATTTTAAAGATGCTTTTGCAACAAATGAAAATGAGAAATTTGAGCAGGTAATTTGATTATTTGAACGCGTGCGAATGAGAAATTTGAGCAAAGTATTTGAAATTAGATTTTTTTTTAATTTAATCAATTTATAGTTATTTAATTATTTACCTTTAATTGTGTAATATGCGTTTGGTTATTGTAATTAACACGAAATAAATTGCAAAATTTCACTAAAATAAACAAATATATTTTTAAGTTCAAATAAACAAAATATAAAATTTTAAATTGTTAGGATTCAGCTTAAACCAATTCGTAATGTAGAGCATTTTGATACGATCACACCACAAAAATCCACGTCTCAAACGGAGCTCATTTGCGAAAAGGCATCAATTTTAAAAAATTATAAAAATAGAAGTTTCAATAGTTCTAAGTAAGAGTTACGTCACTACATTGACGTCCAATGCATCCGACATCAGCGCATCTTTCTTCAGCTTTCCAACAATGAAGTTGAAAAAAGAGTATGTCCATTGCCACAGTGTGACAGGTAGGATGCATCACCAACGAAAACGGACCATTTAACTACTAAGGGTTCTCATAGGCCCAATGAATTGCAACCATCAATCACACTGATTTGATTAAAACCTGATATCTACCCTCTTTAAAAATGATGATGCTTGAATCAACGATTGTGGTGCAAGTGGTATCTGAAAGACAGCTAAGCAATTGATCTCCTTTTTATTTACTAGGACATGAATTCTATTTCTTTCACTTCATCTTTGATATATCTATTTTGCTAACATGTACAAAATAGGATCATTCCCAAAGGTATGATCTCACGTTCTAGTAAATCATTATTGCTGTATATAGCATTTTATGAAGTTCGAGTAAAGTGGATTTACGGATTTGCCATTTAAAATGCAATTTTGTTCAATAGCTAGGCTAGTTTTAAAATAACACGGGTGATAATCTGTGGAATTCAAGGGTTCTATGCAATTGATCCCGTGGGATGGACCATTGAATTCCACTGATCACCACTTTTACAATGGTGTAAAGATAATTATATTCTGCTATTTATTTAAGTTAGGTAAACAGATTGATGGAAATGTTTACCTTAATCGTACAAAATGATTAATTTTAATTGTCTTCTACCAAACAATTAAATATAAAATTTTAAATGGCTGTAGTTTGATTAACTATTTTTTTTTGGATTAGCGGTTCTTCTAGGAATGTAAATGTAATGACATAGCGTGAGGTTATTTAAATTCCAAAAAAGCTAAATTATCGTCTTGTTTTTTACACAACAAAAAAAATAAAAATAAAAAATTAAAGACAAAATTACCTCACAAAAATACTCCTCATTATTTTAATCTACATTTATGTTTTATTTTATTTTTCAAATTTTTTGTCCACCACATAGAACAATAACGTGGTGCCACGCAAAGTAACTGCGTGGTACTTTGAAGACACGTAGGGTCTTCAGGACACCATGCAGTGCAACTGTGTGATACACCGAAGGCACCACGTAACGTATTTTTGGATTATTTTTTTTTGTTTTGTTTTTGGACAACTCGGCAAATGGTGGATTTATTTTTTAATTTTAAGGGCAGCTTAGCAAATTTCTGAGTTCAAATAGGATTTGCCAACGACACAGGAGACTTCATCGTTGTATAATTTATTTATTGAGTTCTGACCATTATGAGATAAATTCTATTTTAATTTTTGGGAATTTGTTTTGATGTTTCGTTTATGTTTGTAATCTGTTGGTAATTGTTTACGACTTCTACATTTAAACTCTTTGAAGTTTCTAACTTTAGGAATTTGCTACTTACAAATTTCAATGTTTGTCACTAATTGCCTACGGTTCTACATTTAAACTCAGAGAGGAGTAATGCTACACATAGAATAACTCTTATGATTTTGTCGTATGCTCTGGATAATTTTCCCCTTGTCTTTCATTTATTTATTTATATATATGTTCTCATATCTTAAGCTATAATTTCTTAGAAGATAAAAGGGTTCACAGCTGCATGCAACGATCTATTATGTAGTGTTTATGGTCTTGATCGATTGACCTTCAGTGATCATTCGTAATATAGTTGTCATTTAGTTGTTATTTTCATATTCTTGACCAAATCGGATTGGTGATGATCAATTAGTAAGCAAATTACATAAATAATTAGTATATTTAATACAATAAAAATGAGTGAATGAGATACATTGCTGATACGTGGCAATAACACTAGTGTTCAGAACATGTAATGCTCCACTGATTTTGTTTTGGAGATGGAGCATGTATCTGGATACTAAAAACCTGGATTTGTTCAACTCACTTAATTGTTTTTTATTTTCAAGAAAATATCATAATCCTGATGTAGTTTTTGTTCATGTGTTCAGATCTGATAATGAAAATCCTGGAAAACAAAGAAAACGGCGCCGTGGAGAATCAGTAGAAGAAATCCTTAGAAACTGGAAGGAAAAGAACAAGATAAACGGCATAAATGCTACATTAAATGATAGAAAAGTGCATGCAAAAGGGTCAATAAAAGGGTGCATGCCCGGAAAGGGAGGTCCATTAAATTCTACATGCACATACCGTGGAGTCAGACAAAGAACATGGGGCAAATGGGTGGCTGAGATCAGAGAACCGATTCATGGTAAACACTTATGGCTCGGTACTTACGGCACCGCATTGGAAGCTGCCCATGCTTATGACTATGCTGCTAGAACCATGTTCGGACCCAATGCTCGTGTTAATTTTCCTGATAATTCATGTTCTTTAGAGTCCAACGCTGTAAGTTCAGAGATTCAGGGTTCAGTTGATCGGAAACCAAGCATCGATCATGATCGGGTGAACGAAGTGTGTACAGATGATTCGTGTTCTTTGAAGTCCGATGCTGTTGGTTCACAGAATCAGGACTTGGTTGATCAGGAAGTAAGTTTTGAGCTTGATCAGATGATCAGCCTGGATGATATTTTTGAGACCATAGATATGAACTCCGAAGGCAACAATATCGACTTGTTATGTCGATCTCTTTGTTCACCGGTTAATGAAAATGGGAATGTGGATATGGTTTGGAACTCAGACTATGTGGAGCAAGAACTTGTAGATTTCGATTATCGAGCACTGTATGAAGGCATGTTCAATTATGGTGCCAAGGACGATGGATTGATGTATGAAGACGCAGAGAACTCGAAGAATAAGGAATCCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	QKE42691.1	1.5e-33	DREB2A
Swissprot	Q0JQF7.1	5.3e-36	Dehydration-responsive element-binding protein 2A
trEMBL	A0A7D3U5K2	1.1e-33	DREB2A

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G40340.1	42.55	3e-32	136	AtERF48;DREB2C	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g520811	AT2G40340.1	188	95	3	150	330	8	189	42.55	3e-32	136
g520811	AT2G40350.1	121	53	1	150	264	3	123	51.24	2e-28	123
g520811	AT1G75490.1	109	47	1	172	280	7	114	55.96	1e-27	120

Ortholog group

Species	Genes
Allium cepa	g520811.t1
Allium fistulosum	AfisC2G01494; AfisC5G00847; AfisC8G02015
Allium sativum	Asa1G03189.1; Asa1G04710.1; Asa7G07325.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	207	256	48.1	9.4e-13

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network