result

Gene information

Detail information of g520931

Location

Gene	Chr	Start	End	Strand
g520931	Scaffold_90643:HRSCAF_473729	55510	61609	+

Sequences

CDS

Protein

Gene

>g520931.t1
ATGGATTGGAATGAAAAGTCTCCTTCGACATGGAATTGGGACAATCATAATTCGCTTTCTGGTTCAGAATTAAGAAATAATTCGTCAAAACGTTTGATTTCTGTATCTACAGTTTCTTCTTCAAAATCACCGACAGAAACAAAAGATCTGCAGCTTAACGAGCAAAGTAAAAATAACGATTTAACGAGGGCAGAACTCGGTTTGAAACTTGGCAAAAGAACTTACTTTGAAGATGCCTGTGCTGGGAACAATAGCATGACTAAGAACTCAAATACTTCAACTACTAAGAAAATTAGAACTTCACAAGTGAGTAGTGCTGCTAATTATCGGTGTCAAGTGGAAGGATGCAATGTTGATTTAAGTGGAGCTAAAGATTATCATAGAAAACACAGAGTTTGCGATGTTCATTCTAAATGCTCTAAAGTTGTGGTAGCCGGACAAGAGTGTAGATTTTGTCAGCAGTGTAGTAGGTACAGCTCATCTTAATATCTTGTTTAAGCAATCACCATAATTGAAGTAATTGTTCTTTTATTTGATAGTCTTATAGTTCTTACTATCTTTAATTGGGAATTCACTTTGGTTATTGTCGTCATACTAATGCCTGCTAAAAGAAGAATATATTGATAAAATAAGATTATATTTTCACCTACTCCCAAGAGCAAAATTTGAATTTAATAGAAGAAGAAGGGCTTGGTTGAAAATATAAATCAATTCATTTGTTTATTTCCAAATAATAGGCAAAGCTGCTTCAGTCCCTTGATGAAACTATGCATGCCCTTGGCTTGTAGCCCACATTCAAATTCTCAATTCATCGTACCAGTTGTTCACAAACTTATCATTTGAATATATTTCATAAAGAAATCATGGCACTACTGATTACTGTGTATTATCTAGGGCAATGCATTTTGTTCACATTATTACCTTTTATGTGTTAAAATAGCACGTAACTTCTATGTTTACACTTGAATCCTATCTGGGACACAACTTTAGTGCATGTTCTCTTTTATTATAATTATTTTATGTGATTTGAAGAAGCAACCATCATTTGTTAAAACTTACAATTGAAATATGCTTAAATAAAATTCAACTATAAAATATTCAAACTTCAGAATATGAAGTGTATAAAGCGTCCCTTAATAAATCGATCGCTCTCAAAATTCTGCATCAATTTATCTCATGGGTGAATGGTAGTAAGTAAAAATTGTTGATGATAATTTCATTCTCATATAAAGGTTTCATGGCTTGTTGGAGTTTGATCATAAGAAGAGGAGTTGCCGTAGGCGTTTATCAGATCATAATGCACGGAGGCGCAAGCCACAAGTAGAGACAATCTCATTCAACTCGTCAACCTACTGTTCTCCATTTTATGGTAATTTTTACTAGCTTAGTTGCTCATCTTGATGGAACATGATCATTCTCAGTATAGTTCATACTGGACATGATGTGCTTATTTCAATGGAAATCTGGGGTCATGTATTTTTGACTTCTAATGAATAAACTCATATGAAGGGATATGTACGAATCCAAACACAGTTATTTGTGTGTTTCTGCAGTAATTTGCATGGAATGCAAACTTAAGTACATGATTGCAATACATTTTTCCTTTTAGCAAAAAAGATATTTAAAGCTTTACTATTAGTAAAAACTTAGCTATCATTTGGTTGAATCATTAACATTTTCTGCTAATCACCATGTGTTAAACAAACCGCAACGTGGGATTGAACAAATGGGGTTAAAAGAGTTCTTATTGTGGAAATCACGTCCGCACATCATTTAACAATACGAACCTTTGTTGTTACATGTGACCAAACTCATTATATATACCACTTCATCTCCATTATTTTTCACGATGTGAGACTATTCTTCTTTTTCAATATGAGCCCATTACCCAAACACAATGCGAGACACCCCAACAGTTGTCCACCTTGGCTCGCATTCATATATGCGTCTTCCAATACGCCAACACGATGTCCGCACCATGTCGAGACTTTGTTTCCGTGTCATTCTACCAGATCCAACGTACCGTGGTCAAGCTCCACCTAAGTCGACTGCTTAAGCCTACACTGCTAACCACCATGATTTACAGATCTTTTGTGCATTGTCCATTGTTCGTAAACAATCACTTCAAGCTTTCCGTATAGATTGTTACGACTAGGATTTATACCCCAAATTAAAGTGCACTTTGATCCTATTTGATTTAATGGTACACAATAGCGTGTTAAATGTTTGTGACTAATATTTTATTACTCCACAACATATAAATTCTGTATTTTGTTGTTCTTAAATGGTTGTAATGTTGCAACCAAAAACTAAATTCATTGCTTCCGTCCAATTAATGACAAGAGATGCACTGTCCACAGTCGCGCTCAAGCTACTGAGCACTTGCTCAGTGATTGGCTCTAGCTTTGACAAGTTTTTTTTTGGTTTTCTATAATATATGTGGGTCCTACTGAAAGAACCAATGATAAAGCAAAGGGACAGTTGCTCCCAAGCAACTTTCCCTATCATTTGCGTTAGTGGCAATTGTATTAAATTTTCTGCACAGGTAATCTCTTGTCTTGTATGGTTATATAGTTTTCTGTTCAATCCCTACCAACTGTACCTCATTAATAAGTAGGCCTTCCACATTGTATCATCAATAAACTGATGAAATTACCATTTACTAAACTTTTCAACTTCAACCATCAGAGTTTTATTATTTCAGTATTCAAGGTTGTTTTGGTGTCATGTTTAGCCTGAAATTTTCTTTGTATGTTACATTTACTGGCTATCAATAACAACTACACAATATGAATTGATTCTAAACGTCTAATTCCATTAAAATTACATTTTTAATTGATGGTTAAAATATATACAACTGATGACTCATAATGAATTGTGAATTTGAATTCGTTAGAAATTTAAAGACGATCCAAATTGTCGAATAGTTTTGTTCTCGATAATTAGCAGATTATATTTACAAAATTTTGCTTAGTTTCACAATTTTTGACACAAAAAGTTGGAATACACGCACACGCACGCACACAGATAAATATGAGGAAGGATTCACAATCGTCTTCCTCCTTTAGTGTCGAAACCTTTTGAAAAGAAACAAAATTTTGTAGATATGATCTATATGCTATCAAGGTCATCTACATAAAAATTTGGATCATTTTGAAATTTTTGACTCTGTTGAAATTATATTTCCAATCTACAATTGAAAAACATATATTTGATGACTCATTGAATTGTAATTTTGAATGAGTTAAAGTTTCGAAACGATCTAAAATTTTGCGGTGTGCGTGTCTATGTGCATGCGCGCGAAACGTTTGTGCTCATGGAAACCGCTCATTAGAAAAACCCAAAAGACAGTTTTGCTGAGGACTAAATCTATGCCCTTAACATAGATCTGGATAATAAAAATATTTGTATGCCATCTGCTTGTAGATGCTAGCAAGGATTATATGTTTCCTTTTAGAAAATTATATATATTAAACACGTAATGTTACATATGCTAGTGTGCTAGTTGTACTTAAATGAATATCCTGACCTTTTTTCTTGCAATCGTTTTTACAGAGGACAGGCAGCAGGTGGGTTTTGTTTTGAATAAAGCCCCATTTAGTATCATGAGGCAGAATGTTAGTTCTACATGGAATGATTCGAGTGGATTCAGCCTCACCCATTCAAAAGGATCTTGGATAAATAAGCCGGTGAAAGTAGAAAGAAGTGATGAGCATACGCAATTGTCTAACACTGCCATATCAAACTTTATTCCATCACTTGCTTTTGACACGGACAAGCTTGTAAATTTTAAGGGCCCCACACACGAGACTCTCGGTGAAGGTAACAATGCTTATGTTGCAATTGTATGTATTATTTATTGCAGGACAACTGAAGCCAGAGTAATATGAATTCTGGGCCAGTTCTGTTCCCTGTATACTGTTCTATCTAAGAGCATCCCAGTAGAGACGGGTACCCAAATAGGCGATTTTTGTGGATATCATTATCAATATTTTAGCTATTCGGTAACTAAATGTTGGTACTAGGTAGGAACCGCCTAAACAATGGTTAAGCAGTATTCATTTAATATGTTTATTACATTTTCATATTTATTTATATTTCCTACATCTTTATTTTCATTTTCTATATGTATATTTTTGTTGTATATATTTATATTTAGTATGTGTAAATTTATATTTCCTCTGTGTGTGTGTATTTATATTTTTGTATGTGTTTGTTATTTATATTTGATATTTTACGTATGGTTTTATGTATAGTTTTATATATATTTATTATTTTGGTTTAAGGTATCAATTTTAAGTTGCATACAGATGAAAAAGTTAAGAAAAAATATACAGGCTTCATGAAATAAAACATAACGTTACATAAAAAAAAAACTATAAATAAAACACAATATGCTACATGGACTAGAACCTTAAATAAAAAATACACTAATTATTATTTCTATGTTTTTTCTTTCACTCTTGCAACAATACTAAACTCTTCATTGAATTTGGTTTGAGCGATTAATATTGTAAGATGTGCAAAAATATTTGCAAATACGTATTCAACCTTATTCTAGCATTTATATTTCGAGCATTGACATAGTCATTTTAATTTTGGTTTTGGATTTGGATTTGATCTTGATTTTTCATTTTGTGAGTATAATTAATTATGGTGAGTGTGAAAGTTAAAATAAAATGTAAAATGGGTAGTGTATTAGAGAAGAAGATCGAATATATTCATATATAAAGACTTATATTTATATATGAAGACTTATCCAATATTTACTGCTACCATTGGAGGTAACAGTAACTATCGAACCTATTAAATAAACGTTTTAATTGTTCATTGTCTCCCAAATTGTACTGGTGGTACGATTCTTAGTATGTGTGACCAGTACAGATTAATTATTCTGTAAAGTAAGAAGGTGCTTTAACTGTAGTAAAAAAAGGAATATACAATTGGAGATTTCGACGTCCATTTCCGTTTCTATCATATAAGATTTTCAAATTATTGGTCAGTTTCAAAAGTCCTAAAAGTTTATGATATGATTCCTTTTTGGATTTTTTTTCTTCTATAGAAATACATTAATAGATAGTATGTATTTGAATTTATAAAAGTAAAACATGTAATATACATGAGAAATGATTTAATTATTGATTTTTTTTGTGTTATTTCAGCTGTATTTTGTTGAAACTGACGAATTTATCCCGAGATTTTCTGAAATTATTTTGTCCATTTTTTTAATTATTTTGTTTGATTTGTTTTCGTTTCACTTCTTTTACACGCTTATTGCATTATTTTTTTCATTTTCTACATCTTTTACTATTTCCCAACATTTCGGAGCCGGAATTTTGGCCAAAACTGGAATTCTGATCTGAGCTGGAACAAAATTACCGGATTCCATCGGAATTTTGAACCGTGGAAGTATGTACTTGTTGTAGACTCTTCTCAGTACTGCTAGAACAAATATAAGAGCAAATATGAAATTTAGTATTATGTAACTTGCGCAAATACATGGGAAACTATGAAATCTCACTATGCAATCACGTATGTACCTCCTTGTTCATACCAATGGTATAAAGAAGAGTCCTACCGCTCATACATACTCATGTAGCTAGCTCATAACTGTAACAGTGGAACTCTGGGTTTGCTCGGAGAGTGTACATTTCGGTGTATATTTAGTCTTTTTTGTTGATCATCACAAGAATGAAATATGTGCAAAACTTTCAGTGCTGCATTTACATTTTATAATATTTTGAACTTGTAATAAAAATATATTGATTCTAAATATATATATTCAGGTACAGAAGCAGTATCAGTTTCAGCTTCTAACTTTGATCGGAGTGCTCTCTCTCTTCTGTCAACTGAGTCTTGGGTTTCCTCAAACCTTGCACAGTCCAATTTCCCACCACTTATAAGCACAAATCGTAATAATAATAATAATAACAGTAATCTAGAAGATGGATATTGGAAATATCAAGTGACTCAGGCTCAAGAAACACCATGTGTTACTCCATTCGAGCATCACAATAGCAACAGCAACGGTGGTCCTCAATTCGATGCTCCATTCTTCGATTCCAACCAAATTCTTTCAAAGCCAAATTTTCTTTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267885.1	4.5e-88	squamosa promoter-binding-like protein 12
Swissprot	Q5Z818.1	4.4e-56	Squamosa promoter-binding-like protein 12
trEMBL	A0A5P1EU73	3.2e-88	SBP-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G43270.1	38.37	6e-39	158	SPL2	squamosa promoter binding protein-like 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g520931	AT5G43270.1	344	146	11	66	387	118	417	38.37	6e-39	158
g520931	AT5G43270.3	344	146	11	66	387	118	417	38.37	6e-39	158
g520931	AT5G43270.2	344	146	11	66	387	118	417	38.37	6e-39	158

Ortholog group

Species	Genes
Allium cepa	g520931.t1
Allium fistulosum	AfisC3G04548; AfisC7G00594
Allium sativum	Asa2G03609.1; Asa5G03974.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g07780.1; LOC_Os02g07780.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03110.11	SBP	Domain	111	184	101.0	2.8e-29

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009965	P	leaf morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010358	P	leaf shaping
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0040034	P	regulation of development, heterochronic
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048506	P	regulation of timing of meristematic phase transition
GO:0048509	P	regulation of meristem development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048532	P	anatomical structure arrangement
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network