result

Gene information

Detail information of g526236

Location

Gene	Chr	Start	End	Strand
g526236	Scaffold_91251:HRSCAF_474337	121318	123505	-

Sequences

CDS

Protein

Gene

>g526236.t1
ATGTCGAACACAACAGCAAGTAAAATATCAAGCTTTTCAGTGACATGCAACCTCTTGGGCCAATTCATCAAAGAGAAAGGTCGTTCTCCCGTGGATCTTAACCTTGCTAGGTCTATTGATGCTTCCATGGGTGAGCTTTTTTCCTTTTTCTTTCCTATTATTAGCGTTTTGAACCTCTTTACTTCATGTTTTTCTTGAATTTTTACTTATTTAATTGGAATGTTTAGGCAAAATAGATGTTGCTATGCATCCGAGACCGAGTACAATGAACCTATTATCAAGCGTGGATGTCTTCGAAACTGATTCGAAAAATAAAGTATCTGGTCAGACACCTGCGAAATGCATGGATTTGTTCCCTCAGCTTGCTGTTTTTGGAGCAAAAGAAGACGGTAAAAGGTCAGTATATGGGTTGATATTTAATAGGCTTTACCTTTTGGATTGCTAAATAGCTCGACTGTCTTAATACAAGCAAGTTATAAACCAAACCTCAGATTCATGTACAGTGTTAACACCATTCCTTGATTTCATATTGCAAATTAAGGTGTATACAAGGAAAATAACATAAATGGTTAACTAGCCCTGGTTAGAAACTTTAGAAGATCTTTTAAGTTCCGGTATCAATGGTGAAAAAGTTTAAAAGATGAAGAGGGAGCACATCTCAATTTATCATGGAGTATATTTTTTTAGACTTTTCTTTTTTTGGACTTTTCTTCATTCTTCTATTTTCTAGATTTTTCTTGATAAAGCATTTTCTAGATTCTTCAAATTACATATTTGATAAATCTAACTTTTCTTCATTTTTTATTTTGGTATTTTCTAAATACAAAGATTATATTTGCAACATAATCAATGTTTCTAAAAAACCAAGTTTATTTCCAACGGCACTTAAGTACCAAACGAAAGAGCCATAAATCTCTTTTGAATAACCTAAAACAGATAGTGTGTATTTTCTGCCTGTGTTTGATGTCGACATCTCAATACACACACAGAGAGTTTGCTTTTAACAAAGGGGTAAAACCAACTATAATTACTTGTCCACTTCCGCTCTAGCGAGAACCTTGGGTGAATGATTATGATGAGATACTGTATAGTTAACATGAGTGTTCAAGAAAAGTATTATTCAAGGAAAATGGAATTTGTCCTACATATACAGAAACAACTATCATGTTTGATATGTTACTGTATATAAGCATAAAATGCTCATTTATAACTTTAACATGTTTAATATGTTACTGTATGTATATATATAAGACAGTGTGTAGTACACTCATTTTCTGCCCACTTTGTCCGACATATCCAGAAACAACTATTATGTTTAATATGTTACTGTATATAAGCATAAAATCCTCATATGCTACCATGCATGATTTATGTAGGGAACAAGAGAGCAAACAATTAACAATATTCTACGCTGGCAAAGTGTTGGTATATGACAATTTCCCAGCAGAGAGAGCAAATGATTTAATTGCACTTGCAGGCAAAGGAAGTGCTGCTACAAACGACTCTCCTGTCTCTGCAGCCCCTTTACCTGTTCGACCAATCACTTTAGGAGCTGAGACTAAAATCGTCTTTTCAACTCCTCCTCCATCTGCACAAACTATTCTCCCTCCAAGACCTGTTCAAACTGTTACTTCCGGTAGTCACTCTCTTTTCCATCATTTTCTTCTGTTAATTAATTACTTCAAACTCGATACCATATTCATATATTTCGGTTTTGACATGATTGTAAAACAAAAAGTTAGATATTGAAACTAAATTTAGGTCATATCAGCATGAGCTTGGTTTGGTTTGATCATAAAGATATAGTTTGGCAACACGGTTTAGATATACCTAGCATAAGGTATAGTTAGGTATATGTCGTCTAAACATTTACTTGATAACTCAACATATTGATATGATATTTGTTTGACAACAGATCTTCCAATTGCACGCAAAGCATCGCTGCATCGATTCTTAGAGAAAAGAAAGGATAGGTGAGCAGCCAACTTCTACCTTAAATGTATTCATCAAAGATCAAAAAGCTACAGTTGAGTTTTGTTGTTTTAATTTTACTGTGGCTAATTGCATATATTTATGATACTGAACATGTAGGGTGAATGCAAGGGTACCATATCAAGTAAATAAGGCAAAAGACTCTCCTGCAGAGAACCAGCCATGGCTTGGACTGAGTTCAGAGTGCAGCAAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020103797.1	1.8e-36	protein TIFY 10a-like
Swissprot	Q8H395.1	3.0e-31	OsJAZ6
trEMBL	A0A8T3ARY0	9.2e-38	Protein TIFY

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G74950.1	35.92	8e-26	114	JAZ2;TIFY10B	TIFY domain/Divergent CCT motif family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g526236	AT1G74950.1	245	116	10	11	229	17	246	35.92	8e-26	114
g526236	AT1G19180.1	258	113	9	11	234	22	252	32.56	1e-23	106
g526236	AT1G19180.2	147	62	6	99	234	53	186	41.50	9e-20	94.0

Ortholog group

Species	Genes
Allium cepa	g121422.t1; g143550.t1; g175586.t1; g199998.t1; g321095.t1; g524015.t1; g526236.t1; g529623.t1; g537452.t1
Allium fistulosum	AfisC1G03921; AfisC2G07008; AfisC3G00614; AfisC3G01670; AfisC3G03920; AfisC4G02030; AfisC4G02950; AfisC5G03580; AfisC8G00209; AfisC8G00621; AfisC8G00783
Allium sativum	Asa1G04293.1; Asa1G04294.1; Asa2G00577.1; Asa3G02593.1; Asa4G01696.1
Arabidopsis thaliana	AT1G19180.1; AT1G19180.2; AT1G74950.1
Oryza sativa	LOC_Os03g28940.1; LOC_Os03g28940.2; LOC_Os07g42370.1; LOC_Os07g42370.2; LOC_Os07g42370.3; LOC_Os09g26780.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06200.11	tify	Domain	102	134	54.5	4.5e-15
PF09425.7	CCT_2	Motif	189	214	52.0	4.2e-14

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13464	JAZ; jasmonate ZIM domain-containing protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network