result

Gene information

Detail information of g526579

Location

Gene	Chr	Start	End	Strand
g526579	Scaffold_91286:HRSCAF_474372	146371	147629	+

Sequences

CDS

Protein

Gene

>g526579.t1
ATGATGAATAATGGAAGAAGCAACAGCTACAACAGCACATACCCATTCACTCAAACTCAATGGCAAGAGCTAGAAAACCAAGCATTGATATACAAATACATGGCTTCAGGCATTCCAATACCTTCTGATCTTCTCCTCCCCATAAAAAGAAGCTTCTACCAAAATCCATCTTCTCCATTCATGCAACCAAGACGTAATTTATTTTATTTTATGTTTCTTTCATTTTTTCCACGTTCCACTTATTTGGGTATGTTTTACTTATACTTATTAGTCATACTAAGCAAAAAAGATTGAATCTTGACATGTAAAAACATGAACTTACAGTGGGATGGAACTGCTACCAAATAGGTTATGGAAGAAAAGCAGAAGATCCTGAGCCAGGCAGGTGCAGAAGAACAGATGGCAAGAAATGGCGGTGCTCTAAAGAAGCGTACCCTGACTCCAAATACTGTGAGAGACACATGCATAGAGGGAAGAATCGTTCAAGAAAGCCTGTGGAAATTTCTCTTGCAAGCAGTACCAGTGCTGCCAACAGTAGTGTTGCTGATTGCCATGTTGTTAATGACTCTTCATCTTCTTCATCGTTTTGTAACAATATTGATCAGTTTCGGTACCCGAACCCTCTTCTGTATTCTCATCCTTATCAGTCTCAGAATAATACTGCTTCCAACTTTGGTCTTGATTCTGGCTCTTTCTCTTCTTCCACTGAAAGAGATTACAGGTACAAACACAACACATAACTAATCTATATTAATAAAAAGAATATTGTATAAAAATATGTGTGTATTTGAATAGGTATTACCAAGGGATGAAGGATGAATATGGGTACATGGCAGACACAAATGGAGGAGATAGAGGGAGTTCATGGGAGCTAAGGCCATTAGGTCTAGGAGAGCCAAGACTTGAGGTAGATGACAATAAGAACAAGCATTGCTTTGTATTAGGAGCAGATTTCAAGCAAGAAAAACCTGTAAAAGAAAGAGATTTCTTTGACCTTGATTGGCCACAAAAGAGCAATAAAGGAACATGGATGGGGTTAGAAGAAGATAACAATAACTCAAACCAAGCACCTAATTCTATTTACTCCAAGACTAATCTTTCCATTTCTATCCCAATGGGTTTGCATGATTTTCCTCAATGGTTTGTTTCTTTGTGTTCTTTAATGCTAAATTTTATGTGTGTAAAGTTGAATACATGTTCATCATACTGAAAGAAAAGGTTTTGATTTCATTGATGTAGATGATTCAAGATGGGACTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008786731.2	4.3e-59	growth-regulating factor 1-like
Swissprot	Q6AWY8.1	1.8e-49	Transcription activator GRF1
trEMBL	A0A6I9S2U5	9.1e-59	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13960.1	66.36	6e-41	164	AtGRF5;GRF5	growth-regulating factor 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g526579	AT3G13960.1	110	35	2	15	123	16	124	66.36	6e-41	164
g526579	AT4G37740.1	124	52	1	15	138	164	285	56.45	9e-39	157
g526579	AT2G06200.1	122	33	3	12	121	3	123	62.30	2e-37	152

Ortholog group

Species	Genes
Allium cepa	g526579.t1
Allium fistulosum	AfisC8G05613
Allium sativum	Asa1G00241.1
Arabidopsis thaliana	AT2G06200.1
Oryza sativa	LOC_Os02g53690.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	15	48	54.5	6.4e-15
PF08879.7	WRC	Domain	81	123	73.2	9.6e-21

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network