result

Gene information

Detail information of g52877


Location
GeneChrStartEndStrand
g52877Scaffold_29681:HRSCAF_270258174973215612+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrRRT64779.18.5e-162hypothetical protein B296_00009774
SwissprotO75716.41.4e-44hPSK
trEMBLA0A426ZLA36.1e-162Protein kinase domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G08160.173.992e-151 532ATPK3;PK3serine/threonine protein kinase 3

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag52877.t1; g91452.t1
Allium fistulosumAfisC1G00915; AfisC2G09424; AfisC4G06025
Allium sativumAsa5G05051.1; Asa7G01013.1
Arabidopsis thalianaAT5G08160.1; AT5G08160.2
Oryza sativaLOC_Os09g06230.1; LOC_Os09g20640.1; LOC_Os09g20640.2; LOC_Os09g20640.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain142407105.62.5e-30

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003824Fcatalytic activity
GO:0005829Ccytosol
GO:0004672Fprotein kinase activity
GO:0004674Fprotein serine/threonine kinase activity
GO:0005623Ccell
GO:0005737Ccytoplasm
GO:0006464Pcellular protein modification process
GO:0006468Pprotein phosphorylation
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009719Presponse to endogenous stimulus
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0016301Fkinase activity
GO:0016310Pphosphorylation
GO:0016740Ftransferase activity
GO:0016772Ftransferase activity, transferring phosphorus-containing groups
GO:0016773Fphosphotransferase activity, alcohol group as acceptor
GO:0019538Pprotein metabolic process
GO:0070887Pcellular response to chemical stimulus
GO:0036211Pprotein modification process
GO:0042221Presponse to chemical
GO:0043170Pmacromolecule metabolic process
GO:0043412Pmacromolecule modification
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0046777Pprotein autophosphorylation
GO:0050896Presponse to stimulus
GO:0051716Pcellular response to stimulus
GO:0070848Presponse to growth factor
GO:0071310Pcellular response to organic substance
GO:0071363Pcellular response to growth factor stimulus
GO:0071495Pcellular response to endogenous stimulus
GO:0071559Presponse to transforming growth factor beta
GO:0071560Pcellular response to transforming growth factor beta stimulus
GO:0071704Porganic substance metabolic process
GO:1901564Porganonitrogen compound metabolic process
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08856STK16; serine/threonine kinase 16EC:2.7.11.1 --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.