result

Gene information

Detail information of g530196


Location
GeneChrStartEndStrand
g530196Scaffold_91727:HRSCAF_4748136254562826+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_019710028.14.1e-24mini zinc finger protein 2-like
SwissprotQ9LJW5.13.2e-21Mini zinc finger protein 2
trEMBLA0A6J0PQN13.0e-24mini zinc finger protein 2-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G28917.158.701e-2197.8MIF2mini zinc finger 2

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag530196.t1
Allium fistulosumAfisC6G04817
Allium sativumAsa0G00543.1; Asa0G00544.1; Asa8G02476.1
Arabidopsis thalianaAT3G28917.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF04770.9ZF-HD_dimerFamily277696.95.6e-28

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001101Presponse to acid chemical
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0046983Fprotein dimerization activity
GO:0007275Pmulticellular organism development
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0042802Fidentical protein binding
GO:0009314Presponse to radiation
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009639Presponse to red or far red light
GO:0009640Pphotomorphogenesis
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009735Presponse to cytokinin
GO:0009737Presponse to abscisic acid
GO:0009739Presponse to gibberellin
GO:0009741Presponse to brassinosteroid
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009908Pflower development
GO:0010022Pmeristem determinacy
GO:0010033Presponse to organic substance
GO:0010073Pmeristem maintenance
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010582Pfloral meristem determinacy
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0014070Presponse to organic cyclic compound
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0033993Presponse to lipid
GO:0035670Pplant-type ovary development
GO:0042221Presponse to chemical
GO:0042803Fprotein homodimerization activity
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043392Pnegative regulation of DNA binding
GO:0044092Pnegative regulation of molecular function
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048367Pshoot system development
GO:0048437Pfloral organ development
GO:0048438Pfloral whorl development
GO:0048440Pcarpel development
GO:0048467Pgynoecium development
GO:0048507Pmeristem development
GO:0048509Pregulation of meristem development
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051098Pregulation of binding
GO:0051100Pnegative regulation of binding
GO:0051101Pregulation of DNA binding
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0065009Pregulation of molecular function
GO:0080090Pregulation of primary metabolic process
GO:0090567Preproductive shoot system development
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:0099402Pplant organ development
GO:1901363Fheterocyclic compound binding
GO:1901700Presponse to oxygen-containing compound
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.