result

Gene information

Detail information of g530956

Location

Gene	Chr	Start	End	Strand
g530956	Scaffold_91790:HRSCAF_474876	786216	788680	+

Sequences

CDS

>g530956.t1
ATGCATTGTTATGAGCTGTCATCGGCATTAGATGCTTTTGCTGACACCCACCTGCACTGTCTAGCTGATCTCTTTTTCATCTTCAGGGAAATAAAGGCAGTAAAAAAAACCCTAGTCCCTTCCCTCTCCATTCTTCCCCCCATTTTTTCCCCTTATTTTATTCCCACACAAAACCAAATCCAATCAAATATAAATATAATTTCCAAACTGGGCACCACAACATTGATGGACCAGTCCAATGGAACCACCACCACGACGTCCACAAGTCTAGACCTAATCGAAAACCCCAACAAAAACCAAGCACCAGCTGCCCCAACAACGAAGAAACCTTGCAAGGACCGCCACACCAAAGTCGACGGCCGCGGCCGCCGGATCCGGATGCCTGCCGCCTGCGCTGCCCGCGTATTCCAGCTCACCCGCGAGTTGGGCCACAAATCCGACGGCGAAACCATCGAGTGGTTACTCCAGCACGCCGAGCCCGCCATCATCGCCGCCACCGGCACCGGCACTGTCCCCGCCAACTTCTCCACCCTCAACATCTCACTTCGCAGCTGCGGTGGCCGCAGCTCCCTTTACTCCTCCAAATCCGCCCCGCTCTCCTTCCACTCCCCGTTCCCCTATCGGCCGGAGTTCCAGGATCCGGGATTCGGGTTCGATCAGAATCAGGAAAGCTACCACAATAAGAGGTTCAGAGAGGATTTGTTCAAGGAGGAGGAACCCAATCAAAGTAGTAATACTAATACTTCGTCTTCGGTTGAGAATAAGCAGGTGGTACGTGCGGCAGCGAACGTGCTGCCAGCAATGTGGGCGGTGGGGCCAGCATCCACAGGAGCAGCAGGGGCCTTCTGGATGCTTCCGGTCTCAGCCGGAAACAACACTCCCACTGCTGCAGACGGGAATAATCCGGCTATGTGGACGGTGCCTGCGCAGTACAGGAGCACCAGCACGGTGCAGGCACCGGTGCAGTTCGTGTCCAGGATGGGACTGCCGAGCATGACGTCCATGCTAAGTCAGCAGCCTGGGCCTGGTTCTAAAGCCCATTTGGGTATTGGGCTTAACGACACCAGTTTCAACATGATTACGGCTCTCAATGCCTATAATCATCAGACTTTGGATCAGCATCAGAGTCAGAGTCACAGTCATGATAGTGCAGATGATCATCACACTAATTCTCAGTAA

Protein

Gene

>g530956.t1
ATGCATTGTTATGAGCTGTCATCGGCATTAGATGCTTTTGCTGACACCCACCTGCACTGTCTAGCTGATCTCTTTTTCATCTTCAGGGAAATAAAGGCAGTAAAAGTAAATATTATCATTCTTTAATCAATCAGTATCTATACTTCAGCTTTCTTTTTCTCTGGTCCTACACCGTAAAATCATCTTACTTTAAATACCTGTACAATGTACATAGTATATACCGTATTATATAGACTGTTTAGTCTGTTTTGGTACATGTTCAGAGTTAGGTACATGGTTTTATTGACTGTTGTTTGCCCATATTATCATTTATTAACCAAAGCAAAAGGAGCAATCATACCTCCTATAAACATAAATTTTATTTACAGTATTTAACTACCACTAGTCTTTTGGTAAATATTTAAACATAAATTTAGATACTGGTTTAATTCATTTTTTTTTCTTAAGATGACATAAGTATGGACAAAAATCTACTGAGCAAATGACGACAATACCAATACTCATTGTTCGCATATTTATGATGCATCTGATTGTATATTAAACACATATATCAGATTATAAGAGCAGTCTATGAAGCCAGTTAAACTGTACATTAAGTTAGTACAAGTAAGTGCTTGCTAGGTCCAGAGATAAGACGGTAAAAAAGTTGATGACATCTAAGTTAAAAGAAGTTGAGCATACACACATTTCACTGTATCTGGTTTCAGATTATATTTGATGATCAAAAACAACAAAGCTTTTTTCCATACAAAAACATTTGAATTTAAATTTGTTATAATATTCATTTGTTTAGAGAAAAACTTACTATAGTTTTCAAATAAAGCTAAAAACTAATAGTACAAATGGAAACTAGGTTTTTAATTTTCATTTTTAAAATGTAAGAAAAAAAAGGACCCTAATTTACTTTCAATGTTATTCATTAGTCTTCTAAAATGCTATACAGTTTAATAAGAATTTTGTACAGTGTCTAAAAACAAACAATAACAACGTCTAAGAACAAAAATACAAGATAATTGTACTACCAACTTTCCTTGTATGTTTTTCTTTGTATTTTTGTATTGTACCCAAACATAATTAGAATTTAATTTCAGTTTCTGTTTCAATATAACAAGTCGGCTTGATTAGTAAAAGTAGAGTGACTTATACGTAGCCAAAAGTCAGTCTCCCAGCCCCCACAACTACCCTACCTCTACAGTCCCACTGCCCCACCATTGACAAGAAGATGTAAACAAAAGGGAAAATAAAATAAAATAAAATAAAATAGATAACCACTCAAAATTTTCAAACCCAAAACACACTATCAAAAGCGAACTCCCACTCCAATATCTTAAAAAAAAAAAAATCCACATTTTATTCCCTCCCCCACTCAAAATCTTTTCCTCCCTCAAAAGAAAACCCTAGTCCCTTCCCTCTCCATTCTTCCCCCCATTTTTTCCCCTTATTTTATTCCCACACAAAACCAAATCCAATCAAATATAAATATAATTTCCAAACTGGGCACCACAACATTGATGGACCAGTCCAATGGAACCACCACCACGACGTCCACAAGTCTAGACCTAATCGAAAACCCCAACAAAAACCAAGCACCAGCTGCCCCAACAACGAAGAAACCTTGCAAGGACCGCCACACCAAAGTCGACGGCCGCGGCCGCCGGATCCGGATGCCTGCCGCCTGCGCTGCCCGCGTATTCCAGCTCACCCGCGAGTTGGGCCACAAATCCGACGGCGAAACCATCGAGTGGTTACTCCAGCACGCCGAGCCCGCCATCATCGCCGCCACCGGCACCGGCACTGTCCCCGCCAACTTCTCCACCCTCAACATCTCACTTCGCAGCTGCGGTGGCCGCAGCTCCCTTTACTCCTCCAAATCCGCCCCGCTCTCCTTCCACTCCCCGTTCCCCTATCGGCCGGAGTTCCAGGATCCGGGATTCGGGTTCGATCAGAATCAGGAAAGCTACCACAATAAGAGGTTCAGAGAGGATTTGTTCAAGGAGGAGGAACCCAATCAAAGTAGTAATACTAATACTTCGTCTTCGGTTGAGAATAAGCAGGTGGTACGTGCGGCAGCGAACGTGCTGCCAGCAATGTGGGCGGTGGGGCCAGCATCCACAGGAGCAGCAGGGGCCTTCTGGATGCTTCCGGTCTCAGCCGGAAACAACACTCCCACTGCTGCAGACGGGAATAATCCGGCTATGTGGACGGTGCCTGCGCAGTACAGGAGCACCAGCACGGTGCAGGCACCGGTGCAGTTCGTGTCCAGGATGGGACTGCCGAGCATGACGTCCATGCTAAGTCAGCAGCCTGGGCCTGGTTCTAAAGCCCATTTGGGTATTGGGCTTAACGACACCAGTTTCAACATGATTACGGCTCTCAATGCCTATAATCATCAGACTTTGGATCAGCATCAGAGTCAGAGTCACAGTCATGATAGTGCAGATGATCATCACACTAATTCTCAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	RRT54734.1	1.7e-55	hypothetical protein B296_00048960
Swissprot	Q9C7G4.1	3.8e-44	Transcription factor TCP22
trEMBL	A0A444C4B6	1.2e-55	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G35560.1	46.67	4e-47	185	AtTCP23;TCP23	TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g530956	AT1G35560.1	270	96	12	108	354	52	296	46.67	4e-47	185
g530956	AT1G58100.1	344	136	13	108	386	57	391	38.95	4e-45	179
g530956	AT1G72010.1	222	72	8	107	289	59	279	49.55	6e-45	178

Ortholog group

Species	Genes
Allium cepa	g297035.t1; g530956.t1
Allium fistulosum	AfisC2G08267; AfisC6G02078
Allium sativum	Asa8G05622.1
Arabidopsis thaliana	AT1G35560.1; AT1G58100.1; AT1G58100.2; AT1G72010.1
Oryza sativa	LOC_Os11g07460.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	112	255	128.0	4.1e-37

Gene Ontology

Accession	Ontology	Name
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0001012	F	RNA polymerase II regulatory region DNA binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1990837	F	sequence-specific double-stranded DNA binding
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network