result

Gene information

Detail information of g532300

Location

Gene	Chr	Start	End	Strand
g532300	Scaffold_42279:HRSCAF_425365	286854	294253	+

Sequences

CDS

>g532300.t1
ATGCCACGTGCTACCATTATGAACTCAAAATTCTTATCCAGGACATTCAGTAATCTTACAACTACAGAGACTGATCATATTATGGGTAGATCACCTTGTTGTGAGAAAAACGGTTTAAAGAAAGGTCCGTGGACACCGGAAGAGGATCATAAGCTCATCACTTATATTCAGAAACATGGCCATGGCAGTTGGAGAACACTTCCTAAAAATGCCGGTCTAGCAAGGTGTGGAAAGAGCTGCAGACTAAGATGGACTAACTATCTGAGGCCTGATATTAAAAGAGGGAGATTTTCTTTTGATGAAGAGGAAACAATTATTCAGTTGCACAGCATACTTGGAAACAAATGGTCGGCGATAGCTGGACGTTTACCAGGAAGGACAGATAACGAAATAAAGAACTACTGGAACACGCATATCAGAAAAAGGCTTCTTCGTATGGGTATCGATCCAGTGACTCACAGCCCTCGACTCGATCTCCTCGACCTCTCTTCGATACTCACAAATCCATCATTGTTTATCAATAATAACAACACTGGTAATGGCGGCATTCCTTCATGTCAAGATATCGACTACATTTCGAGAACTCTAGGACTAAACCCTACCGATCAACTGTTAAGATTTGCGTCAAACCTTCTTGCAAGCAATAATCCACAAATGAATGACCTCAACAGTGCTTTCTTTGTCAACGACCAGTCTCAGTTCATACAGCCAAGTATGCCGAATATGCAAAGTGCTACCACAAGTTATGCAAATATTGACCAATCAATGCCTTATGATCAACAGTATGTCTCTGCAGAGGACTCTAGTGCTTATGTGCAGAACAATAATGGCCTAGACTACAATATGGATGTGAATATGAACATGAATATGAATATGAACATGAACATGAATGCCAGTGCTGCATCGGTTATGTCGACACCTATTTCAAGTTCCGCTACTGATCAGTTGAATTCTTCGTCTGTGCATTTTAACAGCAGCACCGAAGACGAACGTGATAGCTACTGCAGCGAACTTTTTAATTTTCAAATTCCAAGCTTGCTTGATGTAAGCGATTTTATGTAA

Protein

Gene

>g532300.t1
ATGCCACGTGCTACCATTATGAACTCAAAATTCTTATCCAGGAGTACAAATATATGACCAATTAAGTATGTAAAGCGTGTTAAAACATGATAGTCATGCAAACATGTCAACATAATATTATTCAGCATATGCAAATATACATGTAGGCCGACCCTACGCTTATAATACTTACACACATATGTATCTCTTTCTACGTCCCAAAATAGCTACGTGGCACCAACATGGTCAACGCCAGCTTTTACTACAATGATTGACAATAGCTTCTACATATTTTCTTCTAATTAATAGTTTCTCCTCGCTTTTTTTTTTTTTAAAGAAAAAAACTGTGATTATAGCGAATATGAGAAGTTTCTAACCCAATAGAAAACGACACGTATTGCTAGCATATGAATTAAAAAAAGGGCGGCACCGAACCCTTCTTGACTTTAAGTCCAATCTCCTATATAAGCATCAACCATTTCGATTACCTTCTTATTCACATCAAGTTTTAACCAAAAGGAAACATTTAGTTTATATAAACATAGTGAGCATTCAGTAATCTTACAACTACAGAGACTGATCATATTATGGGTAGATCACCTTGTTGTGAGAAAAACGGTTTAAAGAAAGGTCCGTGGACACCGGAAGAGGATCATAAGCTCATCACTTATATTCAGAAACATGGCCATGGCAGTTGGAGAACACTTCCTAAAAATGCCGGTAATTTCCTTTTCTATACACACACTTTTATATAGCTTAGTCATTTAATATATATAAAGTTACTGATTTATGACTGGGTTACAGGTCTAGCAAGGTGTGGAAAGAGCTGCAGACTAAGATGGACTAACTATCTGAGGCCTGATATTAAAAGAGGGAGATTTTCTTTTGATGAAGAGGAAACAATTATTCAGTTGCACAGCATACTTGGAAACAAGTGAGTGTTTTATCTATTTCTTTACTACTCTGCTTGTGCAATAATGAAATCTTCTTATATGATAATTAACAAAGAATGTGTTGATATGACACAGATGGTCGGCGATAGCTGGACGTTTACCAGGAAGGACAGATAACGAAATAAAGAACTACTGGAACACGCATATCAGAAAAAGGCTTCTTCGTATGGGTATCGATCCAGTGACTCACAGCCCTCGACTCGATCTCCTCGACCTCTCTTCGATACTCACAAATCCATCATTGTTTATCAATAATAACAACACTGGTAATGGCGGCATTCCTTCATGTCAAGATATCGACTACATTTCGAGAACTCTAGGACTAAACCCTACCGATCAACTGTTAAGATTTGCGTCAAACCTTCTTGCAAGCAATAATCCACAAATGAATGACCTCAACAGTGCTTTCTTTGTCAACGACCAGTCTCAGTTCATACAGCCAAGTATGCCGAATATGCAAAGTGCTACCACAAGTTATGCAAATATTGACCAATCAATGCCTTATGATCAACAGTATGTCTCTGCAGAGGACTCTAGTGCTTATGTGCAGAACAATAATGGCCTAGACTACAATATGGATGTGAATATGAACATGAATATGAATATGAACATGAACATGAATGCCAGTGCTGCATCGGTTATGTCGACACCTATTTCAAGTTCCGCTACTGATCAGTTGAATTCTTCGTCTGTGCATTTTAACAGCAGCACCGAAGACGAACGTGATAGCTACTGCAGCGAACTTTTTAATTTTCAAATTCCAAGCTTGCTTGATGTAAGCGATTTTATGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256440.1	9.6e-98	myb-related protein Zm38-like
Swissprot	Q9LDR8.1	4.2e-82	Myb-related protein M4
trEMBL	A0A5P1FDG0	6.9e-98	Transcription factor MYB41-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G21440.1	51.27	3e-82	302	ATM4;ATMYB102;MYB102;MYB102	MYB-like 102

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g532300	AT4G21440.1	353	141	7	28	353	1	349	51.27	3e-82	302
g532300	AT4G05100.1	130	12	1	28	156	1	130	90.00	9e-71	264
g532300	AT4G28110.1	129	17	0	28	156	1	129	86.82	7e-69	257

Ortholog group

Species	Genes
Allium cepa	g532300.t1
Allium fistulosum	AfisC3G00023; AfisC3G00024
Allium sativum	Asa4G02553.1
Arabidopsis thaliana	AT4G05100.1; AT4G21440.1; AT4G28110.1
Oryza sativa	LOC_Os07g37210.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	41	88	60.2	1.4e-16
PF00249.28	Myb_DNA-binding	Domain	94	138	53.7	1.5e-14

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001076	F	transcription factor activity, RNA polymerase II transcription factor binding
GO:0001101	P	response to acid chemical
GO:0001134	F	transcription factor activity, transcription factor recruiting
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0008150	P	biological_process
GO:0009611	P	response to wounding
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009719	P	response to endogenous stimulus
GO:0009723	P	response to ethylene
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009753	P	response to jasmonic acid
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0033993	P	response to lipid
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0097305	P	response to alcohol
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network