result

Gene information

Detail information of g534257

Location

Gene	Chr	Start	End	Strand
g534257	Scaffold_92137:HRSCAF_475223	417341	418195	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275328.1	7.0e-67	protein Barley B recombinant-like
Swissprot	Q9SKD0.1	1.4e-48	Protein BASIC PENTACYSTEINE1
trEMBL	A0A5P1EMS0	5.1e-67	GAGA-binding transcriptional activator

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G01930.1	42.90	1e-54	209	ATBPC1;BBR;BPC1	basic pentacysteine1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g534257	AT2G01930.2	310	124	10	1	284	1	283	42.90	1e-54	209
g534257	AT2G01930.1	310	124	10	1	284	1	283	42.90	1e-54	209
g534257	AT1G68120.1	288	156	7	1	284	1	270	38.19	7e-46	181

Ortholog group

Species	Genes
Allium cepa	g132570.t1; g534257.t1
Allium fistulosum	AfisC1G05851; AfisC4G02135; AfisC4G02145
Allium sativum	Asa4G01782.1; Asa7G03538.1; Asa7G03549.1
Arabidopsis thaliana	AT1G14685.1; AT1G14685.2; AT1G14685.3; AT1G68120.1; AT2G01930.1; AT2G01930.2
Oryza sativa	LOC_Os10g02509.1; LOC_Os10g02584.1; LOC_Os10g02584.2; LOC_Os10g02584.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06217.9	GAGA_bind	Domain	1	284	274.9	1.4e-81

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009723	P	response to ethylene
GO:0009725	P	response to hormone
GO:0009889	P	regulation of biosynthetic process
GO:0010033	P	response to organic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0042221	P	response to chemical
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network