result

Gene information

Detail information of g534729

Location

Gene	Chr	Start	End	Strand
g534729	Scaffold_92176:HRSCAF_475262	240145	241653	-

Sequences

CDS

>g534729.t1
ATGGCTACCATGCAGTTCTCAGTATTCCTTAACTGTACTTTGTCTGACATTCTCATAGCTATGCTCTTCCTCTTCATATCAAGTATAGTAGTAAACTACTTCACATCTAAAGGCCCAATGCTATGGCCAATTCTAGGCATAATCCCAACTGTCTTCTACAACATGTCAAACATTTACGAATGGGCTACTGATTCTGTTATACGCTCCAAAGGCACGTTTCACTACCGTGGTATGTGGTTTGGAAAGTGCCATGGGGTCATCACAATCAACCCTAGCAACATCGAGTACATGCTGAAGACAAACTTCACTAACTTCCCCAAAGGAAAATATTTTCATGTAAGGTTTGTTGATTTCCTTGGTAATGGCATATTCAATGCAGATTATCAGATTTGGAAGGAACAGCGCCGCGCTGCAAATGCTGCAATGCACTCTTCCAGGTTTCAAGAGTATTCCATGCAGACCGTAACAGATTTGGTGCAGTGTAAATTGCTAGTTTTGATGGACAAAATTGCGAAAGAGGACATGGTTATCGATTTACAAGAAGTGCTTTTGAGGTTTACTTTTGATAATATATGCACTGCTGCTTTTGGTGTTGATCCTGGATGCCTTGATGTGAGCTTACCCGAGGTTGAGTTTGCCAGAGCTTTCGAAGAGGCGACTGAACTTACGTTGTTTAGGTTCACTGTGCCTCCTTTTGTATGGAAAATTATGAAGGCGTTTAATGTAGGGTCGGAGAAGAAGTTAAAACTAGCGATTAAAACAGTTCATGAATTCGCAGAAAGAACAGTTTTGAATCGTCGTGCTGAGCTTCACAAGCTTAGCGAAAGGTGCGATCTTTTGTCAAGATTAATGGAAGTTGGATCATATTCAGACAAATTCTTGAAGGACTTTTGCATAAGTTTCATACTAGCAGGAAGAGATACAAGTTCGGTTGCACTGGCATGGTTTTTCTGGCTACTGAATGAAAACCCACATGTAGAAAATCGCATACTTGAGGAGTTATCAAGTATTAAAGATGATGCAAGTGATGCATGCACAGTGGCTGATTTGAAGAGAATGGAGTATCTGCAAGCTGCAATATCGGAATCTCTGCGTTTGTATCCGTCTGTGCCCATAGATTTTAAAGAAGTTCAAGAAGACGATACTTTTCCTGATGGCACGAAAGTGAAGAAAGGCGCTAGAGTTATATATTCAATATATTCAATGGCGAGGAATGAAGAGATATGGGGGAAAGACTGCAGGGAGTTTAAGCCTGAAAGATGGTTAAAAGATGGGATTTTTGTGAGTGAGAATCAGTTTAAGTATGCAGTGTTTAATGCTGGTCCAAGGTTGTGTATTGGTAAGAAGTTTGCTTATATGCAAATGAAGATGGTGGTTTCTTCGATTTTGAGAAAATATCATGTTCATGTTGTGAATGATCAGGAAGTTGTTCCTAAGCTAAATACTACTCTGTATTTGAAGAATGGGCTTAAAGTGACTGTTAAGGCTAGAGCAGAGATTGAAGTTTGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246857.1	7.7e-194	cytochrome P450 86B1
Swissprot	Q9FMY1.1	6.3e-140	Cytochrome P450 86B1
trEMBL	A0A5P1E6M6	5.6e-194	Cytochrome P450 86B1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G24540.1	54.51	3e-168	588	CYP86C1	cytochrome P450, family 86, subfamily C, polypeptide 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g534729	AT1G24540.1	510	212	5	8	497	11	520	54.51	3e-168	588
g534729	AT1G13140.1	512	230	4	8	498	14	525	50.98	2e-158	555
g534729	AT3G26125.1	514	221	4	14	498	20	533	51.36	2e-153	539

Ortholog group

Species	Genes
Allium cepa	g485238.t1; g534729.t1
Allium fistulosum	AfisC2G07104; AfisC5G03751; AfisC5G03766
Allium sativum
Arabidopsis thaliana	AT1G13140.1; AT1G13140.2; AT1G24540.1; AT3G26125.1
Oryza sativa	LOC_Os02g38290.1; LOC_Os02g38290.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00067.19	p450	Domain	74	487	266.5	3.7e-79

Gene Ontology

Accession	Ontology	Name
GO:0000038	P	very long-chain fatty acid metabolic process
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0005783	C	endoplasmic reticulum
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006082	P	organic acid metabolic process
GO:0006629	P	lipid metabolic process
GO:0006631	P	fatty acid metabolic process
GO:0006633	P	fatty acid biosynthetic process
GO:0006725	P	cellular aromatic compound metabolic process
GO:0008150	P	biological_process
GO:0008610	P	lipid biosynthetic process
GO:0009058	P	biosynthetic process
GO:0009698	P	phenylpropanoid metabolic process
GO:0009699	P	phenylpropanoid biosynthetic process
GO:0009987	P	cellular process
GO:0010345	P	suberin biosynthetic process
GO:0012505	C	endomembrane system
GO:0016053	P	organic acid biosynthetic process
GO:0019438	P	aromatic compound biosynthetic process
GO:0019748	P	secondary metabolic process
GO:0019752	P	carboxylic acid metabolic process
GO:0032787	P	monocarboxylic acid metabolic process
GO:0042761	P	very long-chain fatty acid biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043436	P	oxoacid metabolic process
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044255	P	cellular lipid metabolic process
GO:0044281	P	small molecule metabolic process
GO:0044283	P	small molecule biosynthetic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0044550	P	secondary metabolite biosynthetic process
GO:0046394	P	carboxylic acid biosynthetic process
GO:0071704	P	organic substance metabolic process
GO:0072330	P	monocarboxylic acid biosynthetic process
GO:1901360	P	organic cyclic compound metabolic process
GO:1901362	P	organic cyclic compound biosynthetic process
GO:1901576	P	organic substance biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12195	CHMP6, VPS20; charged multivesicular body protein 6	EC:-	Endocytosis	ko04144
K12195	CHMP6, VPS20; charged multivesicular body protein 6	EC:-	Necroptosis	ko04217
K15402	CYP86B1; fatty acid omega-hydroxylase	EC:1.14.-.-	Cutin, suberine and wax biosynthesis	ko00073

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network