result

Gene information

Detail information of g53475


Location
GeneChrStartEndStrand
g53475CHR31381773213818463+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrRYQ80741.11.1e-68hypothetical protein Ahy_Scaffold1g106946 isoform A
SwissprotO23160.15.0e-58Myb-related protein 73
trEMBLA0A444WTM17.9e-69Transcription factor MYB44-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G67300.150.371e-60 229ATMYB44;ATMYBR1;MYB44;MYBR1myb domain protein r1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag53475.t1
Allium fistulosumAfisC3G08473
Allium sativumAsa0G01791.1
Arabidopsis thalianaAT4G37260.1; AT5G67300.1
Oryza sativaLOC_Os02g09480.1; LOC_Os06g43090.1; LOC_Os09g01960.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain55064.94.8e-18
PF00249.28Myb_DNA-bindingDomain5910153.32.1e-14

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988Ftranscription factor activity, protein binding
GO:0000989Ftranscription factor activity, transcription factor binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001076Ftranscription factor activity, RNA polymerase II transcription factor binding
GO:0001101Presponse to acid chemical
GO:0001134Ftranscription factor activity, transcription factor recruiting
GO:0001135Ftranscription factor activity, RNA polymerase II transcription factor recruiting
GO:0006790Psulfur compound metabolic process
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006952Pdefense response
GO:0042742Pdefense response to bacterium
GO:0050832Pdefense response to fungus
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006082Porganic acid metabolic process
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0042493Presponse to drug
GO:0010038Presponse to metal ion
GO:0009414Presponse to water deprivation
GO:0009415Presponse to water
GO:0009605Presponse to external stimulus
GO:0009607Presponse to biotic stimulus
GO:0051707Presponse to other organism
GO:0009617Presponse to bacterium
GO:0009620Presponse to fungus
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009719Presponse to endogenous stimulus
GO:0009723Presponse to ethylene
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009737Presponse to abscisic acid
GO:0009739Presponse to gibberellin
GO:0009751Presponse to salicylic acid
GO:0009753Presponse to jasmonic acid
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009966Pregulation of signal transduction
GO:0009967Ppositive regulation of signal transduction
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010200Presponse to chitin
GO:0010243Presponse to organonitrogen compound
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010646Pregulation of cell communication
GO:0010647Ppositive regulation of cell communication
GO:0044212Ftranscription regulatory region DNA binding
GO:0010928Pregulation of auxin mediated signaling pathway
GO:0010929Ppositive regulation of auxin mediated signaling pathway
GO:0014070Presponse to organic cyclic compound
GO:0016143PS-glycoside metabolic process
GO:0046677Presponse to antibiotic
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019748Psecondary metabolic process
GO:0019757Pglycosinolate metabolic process
GO:0019760Pglucosinolate metabolic process
GO:0046686Presponse to cadmium ion
GO:0022622Proot system development
GO:0023051Pregulation of signaling
GO:0023056Ppositive regulation of signaling
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0033993Presponse to lipid
GO:0042221Presponse to chemical
GO:0043207Presponse to external biotic stimulus
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043436Poxoacid metabolic process
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044281Psmall molecule metabolic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0047484Pregulation of response to osmotic stress
GO:0048364Proot development
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048527Plateral root development
GO:0048528Ppost-embryonic root development
GO:0048583Pregulation of response to stimulus
GO:0048584Ppositive regulation of response to stimulus
GO:0048585Pnegative regulation of response to stimulus
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051704Pmulti-organism process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0080134Pregulation of response to stress
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:0098542Pdefense response to other organism
GO:0099402Pplant organ development
GO:1901000Pregulation of response to salt stress
GO:1901001Pnegative regulation of response to salt stress
GO:1901135Pcarbohydrate derivative metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1901657Pglycosyl compound metabolic process
GO:1901698Presponse to nitrogen compound
GO:1901700Presponse to oxygen-containing compound
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000022Pregulation of jasmonic acid mediated signaling pathway
GO:2000031Pregulation of salicylic acid mediated signaling pathway
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001023Pregulation of response to drug
GO:2001038Pregulation of cellular response to drug
GO:2001141Pregulation of RNA biosynthetic process
GO:0090696
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09422MYBP; transcription factor MYB, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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