result

Gene information

Detail information of g535109

Location

Gene	Chr	Start	End	Strand
g535109	Scaffold_92222:HRSCAF_475308	7956	10293	-

Sequences

CDS

Protein

Gene

>g535109.t1
ATGAAGGAAGTGATCAACAGCAGAAGGCAGGTGGCATCTCCTTGCGCAGCGTGCAAATTGCTGCGTAGAAGATGCACAAAAGAATGCATGTTTGCACCGCATTTCCCTGCTGATCAGCCTCAAAAATTTGCAACTGTGCACAAGGTTTTTGGTGCTAGCAATGTTAACAAGCTTTTGCAGGTATTATTCAGAATTCATTTTTTATTTTCTCGTGACCTTTTATTTTCTTTTTAATAAAGGGATTATACATGCCAAGATAAAATTTTCCAAAAACCTTATGGTAGGTAACCAAATGTTTATCATTTTTACTAGCGGTCATCGGCTGTTAACTATACCAATGTGCGTTGGAATGCAATTTTGCTCTCTTGTTGCGTAATGCCATGAAAAATAAAGAGTGTCGATTTTTCTATGTTCGTGTACTAGATCATGTAGACCGTGTTTGGCAAAATCAATTTGATCATTTTCTTGAATACTTCCATCCACTATACTTGGGCAATATAGGCGCTGCTGTGAGAAGGTATACATTAGATGCTACATATTCCGCGCAGCTTTGATCAGTTAATGCTGCGCTGCGAACACTCCCTAGTCTCTAACGCTCACGTATCTTGCACCCCTAACATGACTTCTACGTGGCGTTGCTAACTCAATCGTATCATCAGCCGCTACTGCCTGGAACTGTGTAACCTGGCGCTTAGTTTATCTCATGCTCACATCTCTAGGTCGCACGGCACGTGTGAGCAGCGTCGCGGCTTATATGCACGTCGGACGATTTTTGAAGAATATGCTAGAAATAGGTCGTCAATTACTCCAAAATAGTTCAGCTTACTTAAGAAGTATATACCTATTGGCGTTATTCAGTTCTGTACATGCAATTATACATTTTGATCTCCAACATAGTATGGAACAGCTCATACCAGCACGTCTCGAGAGATCTAGCCTCTAATCTTCACGTCCGCACGCCATAAGAGGCGATTGAGGTCACACAGTCAGCACTCCATCATGTATATCACGCCGAGAGTCATCTGATATATATAAAGCATAAAACAACTGCGGGTCGCAGTCTACCCAGGAAGCTAGATCAGTCTCGCTCGTGAGCTCTGCACAGTGCGTATACCGTCCACGCCCTCTCAGGTCACCGGCTCTCTGGTGTGTGTCTAGTGTGTGTCAGTTAGCGTATTCGTCCTGCTTCCGGCCAACCACGCCAGCGTGACCCTACGCAAAATCGGCACGCATCTCCTGACTCGTTTCTCCAGCATCCTCTGCATTCCATCATCCCTATGCCATTGCCTGGTGCACGTACATACCCGAATAACCTTAAATTCCCTCTGGAGATCGATCCATCCTTCTACATGTCTGGCACTCCTCAGTCCGAAGGTTTCAAAAAAGACAAAGAATAACTGGGAGAAGATGATAGACAAAAACACGGACTAGAGACAACAGGAGCCTGAGGCGTGTGCTGTGCAGAATCAAGTGGCTCTAGGCGCTATCGCGTTCTGCAACTGGTCAGTCAAAATCGCTCTATAGGCATCTGACCTCATCGAGTGCACCGTCCGTCTATGAAGACGCCCATGCCCGTCCATGCCATTCGCCTATTCCTTGCCCGAGCAAAGGCTCGACGATCTTGTCTACATTAGGCGATCATCTAATCCGTCCAGAGTACCTCGCAGTAGCAAAAATGACTGTTCCCGTAAGGTCCCGGAAATGTGTGACAGCGAAACATGCTACGCAGAAAAAGTAGAGGAAAAAGCAGCAGCCAATAGCAATCAGCTGGAAAAGTGTCAGTACACTGACACTGTCGCGCCCTCAAATAACTTCTACGGTATCGAGACACCATATACGTCATGATAGCACGTCGCTCCGACACGGGCGCTGGTACACCATACACTGGTTCTACCTGCTTCAGATAGCATCCACGGCGCAGGACACTCGATCACATAACCCCAAAACATCAAAGAAAAACAACAAAGAACAACTACACAACAACACAAACCAAATGAAAAACACCGAGAACAACAAAGCATCTAAGACGCCACACCCAAGTACACCACATACACAACAAACCAAAATATACAACCCACACACAGCACACCAAGCAGCACAGACTCCATCAGCCGCGGCCACAGCCGAGTCCTCGTGGCTGCACCTATCCTGCACTTGGCCGCCTCGCGCCCGTTCGTTAACAACTCCAATAATGATTCGCAACTCTCCGTGTCATAGCCAACCCAAACTACCACACGTCACCCCCTACACCAACACCCCAACTCACGCCATCCACAGAATACACGAAAAACGCCACCGAGGATGGCTCTTAATGTTGAATTTGAAAAATTTATTGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	PSS03173.1	3.4e-18	LOB domain-containing protein
Swissprot	Q9SHE9.1	1.1e-18	ASYMMETRIC LEAVES 2-like protein 6
trEMBL	A0A7J0GP86	2.4e-18	LOB domain-containing protein 4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G31320.1	71.43	8e-21	98.2	LBD4	LOB domain-containing protein 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g535109	AT1G31320.1	63	15	2	1	62	1	61	71.43	8e-21	98.2
g535109	AT5G66870.1	85	36	2	12	96	5	85	52.94	3e-19	93.2
g535109	AT1G65620.4	85	33	2	13	96	8	87	54.12	6e-19	92.0

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	14	65	77.4	8.1e-22

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network