Detail information of g535960


Location
GeneChrStartEndStrand
g535960Scaffold_92329:HRSCAF_4754151720928723+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008783143.13.8e-93protein CUP-SHAPED COTYLEDON 2
SwissprotO04017.12.7e-83NAC domain-containing protein CUC2
trEMBLA0A8K0MZ251.0e-95Protein CUP-SHAPED COTYLEDON 2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G53950.149.495e-85 311ANAC098;ATCUC2;CUC2NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag431633.t1; g535960.t1
Allium fistulosumAfisC6G03893; AfisC6G05876
Allium sativumAsa4G06489.1
Arabidopsis thalianaAT1G76420.1; AT5G53950.1
Oryza sativaLOC_Os08g40030.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02365.12NAMFamily17144100.65.8e-29

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0001763Pmorphogenesis of a branching structure
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006355Pregulation of transcription, DNA-templated
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0009790Pembryo development
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0009791Ppost-embryonic development
GO:0009793Pembryo development ending in seed dormancy
GO:0009889Pregulation of biosynthetic process
GO:0009933Pmeristem structural organization
GO:0010014Pmeristem initiation
GO:0010016Pshoot system morphogenesis
GO:0010072Pprimary shoot apical meristem specification
GO:0010154Pfruit development
GO:0010223Psecondary shoot formation
GO:0010346Pshoot axis formation
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0048646Panatomical structure formation involved in morphogenesis
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0022603Pregulation of anatomical structure morphogenesis
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0040034Pregulation of development, heterochronic
GO:0048316Pseed development
GO:0048366Pleaf development
GO:0048367Pshoot system development
GO:0048507Pmeristem development
GO:0048508Pembryonic meristem development
GO:0048532Panatomical structure arrangement
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048856Panatomical structure development
GO:0048859Pformation of anatomical boundary
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:0090421Pembryonic meristem initiation
GO:0099402Pplant organ development
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090691
GO:0090709
GO:0140110
GO:1905393
GO:1905428

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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