result

Gene information

Detail information of g536037

Location

Gene	Chr	Start	End	Strand
g536037	Scaffold_92338:HRSCAF_475424	469205	471685	-

Sequences

CDS

>g536037.t1
ATGGCCATCAACATCCACAAATTAGGAATCCTTTTCTTCACTATTTTAACCATTAATCATTGCTATTGTGCTTACACACCTCCCGACAACTACTTAATAAACTGTGGCTCTTCTTCAAATACAGTAGTCGGTACCAGAACCTTCTTAGCAGATTCACCGCCGTCAGTTATCATAACACCATCAAATCAAGTGTTCGCCAACTCTTCATCAAACTCAGTATCACAACTTTACCAAACAGCTCGAATCTTTACAGCCCCTTCATCATATACCTTCCCAATGAAAAGCTCTGGTCGCCACTTCATCCGCCTTTACTTCTTCCCCTTCAAGTACCAAAACTTCAACCTTCCTAGCTCCATGTTTTCCGTAACCACCCAAAACGTCACGCTCCTCAACAACTTCCACCCAAAATCCACCTCCACCTTCCAAGAATTCTCGGTGAATGTCACCTCAGATACCCTCATAATTACGTTCACGCCATCCTCATCATCTTCCCCTGCCTTCATAAATGCCATAGAAGTCGTCTCTGTCCCCGACAACCTAATAGAAGCGGATGTCCAATCCATAAACATGGGACCTTACTCTAACCTGAACCAACAAGCTTTGCAAACAATGTATAGGGTCAACATGGGGGGGCCTTTAGTAACTCCCGACAACGACACCCTCTCTCGAACTTGGGAAAACGACCAAAAGTACCTTCTAAACCCTAAAGTAGCACAATTTAAGAATACCTCAGGTGACATTAGCTACCCTCCAGGAGGAGCCGATGAACAAACTGCTCCTGAAATCGTGTATGCTACTTGCACCGAGTTGGAAGCAACAAATGTAAGTGCAGCGATGTTTAACGTTACATGGCAATTCAATGTTGATGATAGTGATACTACTTTGTACCTAGTTAGGATGCATTTTTGCGACATAGTTAGTAAATCAGCATCTGATGGTCTATTGTTCAATGTGTTCATCGGTAGCGCTTATGCCAAGCACGATTTGGAGTTGTCGCAGTTGACGCTCAATTCACTTGCTACGGCCGTTTACATCGATACGGTGGCAAAAGTTAATGATGGGTCGGGCAAGCTTAATGTAAGTATTGGGCCTTCGACTACCGACCCGAGCACTTCGCCAGATGGGATCTTGAATGGGCTTGAGATCATGAAAATCGTGAACATGTCTTCAACGAACGTGGTTGCACCATCTGGGTCAAAGGGTAGTTTAGGAACTATATTGGGTTGCATTTTCGGTGTGCTAGGGTTGGTGGTTATAATTGTAATTGCTGTGTTCATGGTGAAAAAGAAAAGGAAGGAAGCGAAGAAGCAACACTCGAAGACGTGGCTACCGTTCTCAGTCAACGGGATGACAAATCATAGTGTAGGAAGCATCCTTTCGAACGGAACGGTTTCTTCGGGACAAAACACAAGCTACCGTTTTCCATTCGTGGTGGTGCAAGAAGCTACTAACAACTTCGATGAGAATTGGGTTATAGGAGTGGGTGGATTTGGAAAAGTGTATAAAGGTACTCTAAGGGACGATACGGAGGTGGCGGTTAAGAGAGGAAACCCCAAATCACAACAAGGCTTGAACGAGTTTAGAACGGAGATCGAGCTTCTTTCTAGGTTACGTCATAGGCATTTGGTTTCACTTATCGGGTACTGTGATGAAGGCAATGAGATGATACTTGTTTATGAGTACATGGAGAAAGGCACGCTCAAGAGTCATTTGTACAACTCGGATTATCCGAATTTGAGTTGGAAGCAGAGGTTGGAGATATGTATAGGGTCTGCAAGAGGGCTACATTATCTGCATACGGGTTCATCTACGGCTATCATTCACCGAGATGTTAAGTCTGCTAATATATTGCTGGATGAGAATTTACTTGCTAAGGTTGCAGATTTCGGGTTGTCGAAAACAGGACCCGAGCTGGACCAGACCCATGTTAGTACGGCTGTGAAAGGTAGTTTCGGGTATTTGGACCCGGAATATTTCAGAAGGCAACAACTGACTGAAAAATCGGATGTGTACTCGTTTGGAGTAGTGTTGCTAGAAGTGCTTTGTGCTAGGCCCGTTATAGACCCGACTCTTCCTAGGGAGATGGTGAACTTAGCGGAGTGGGGGTTGAAGTGGATAAAGAGAGGGGAGCTGGATCAGATAGTGGATCAACGGATAGCGGGTACGATAAGACCCGATTCGTTAAGGAAGTTTGGTGAGACGGTAGAGAAATGCTTAGCGGATTATGGAGTTGAAAGGCCGACCATGGGAGATGTGCTGTGGAACTTGGAATATGCAGTGCAGTTACAGGAGGCTGATTCCAGTGCTTCTGAAGTGAATAGCATCAATAGAATTGTAGAGCTGTCTTCTCAGGTTCAGAATATTGGAAATATCGAGAATATGAACAGCAGGAGTAGTGGTAACAATGCAGTGCCGGATGACTTGTCAGATGTTTCGATGAGCCGCGTTTTCTCGCAGTTGATCAAATCAGAAGGGAGGTAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020273884.1	1.1e-301	LOW QUALITY PROTEIN: receptor-like protein kinase HERK 1
Swissprot	Q9LX66.1	6.2e-246	Protein HERCULES RECEPTOR KINASE 1
trEMBL	A0A6G1CWN6	8.3e-288	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G46290.1	57.65	0.0	927	HERK1	hercules receptor kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g536037	AT3G46290.1	843	327	16	1	826	1	830	57.65	927
g536037	AT5G59700.1	839	334	14	6	826	4	829	56.50	872
g536037	AT5G54380.1	853	388	19	10	826	11	855	49.36	760

Ortholog group

Species	Genes
Allium cepa	g536037.t1
Allium fistulosum	AfisC3G06886
Allium sativum	Asa2G05666.1
Arabidopsis thaliana	AT3G46290.1; AT5G59700.1
Oryza sativa	LOC_Os03g17300.1; LOC_Os03g17300.2; LOC_Os03g17300.3; LOC_Os03g17300.4; LOC_Os05g06990.1; LOC_Os06g22810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12819.4	Malectin_like	Domain	33	385	133.7	7.3e-39
PF07714.14	Pkinase_Tyr	Domain	491	685	163.4	5.5e-48

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0000902	P	cell morphogenesis
GO:0008152	P	metabolic process
GO:0016049	P	cell growth
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0005623	C	cell
GO:0005911	C	cell-cell junction
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0040007	P	growth
GO:0009653	P	anatomical structure morphogenesis
GO:0008150	P	biological_process
GO:0009506	C	plasmodesma
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009741	P	response to brassinosteroid
GO:0009826	P	unidimensional cell growth
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0014070	P	response to organic cyclic compound
GO:0016043	P	cellular component organization
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0030054	C	cell junction
GO:0032502	P	developmental process
GO:0032989	P	cellular component morphogenesis
GO:0033993	P	response to lipid
GO:0036211	P	protein modification process
GO:0042221	P	response to chemical
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0048589	P	developmental growth
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050896	P	response to stimulus
GO:0055044	C	symplast
GO:0060560	P	developmental growth involved in morphogenesis
GO:0071704	P	organic substance metabolic process
GO:0071840	P	cellular component organization or biogenesis
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network