result

Gene information

Detail information of g537177


Location
GeneChrStartEndStrand
g537177Scaffold_92461:HRSCAF_475547288690301961+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020265240.11.4e-92mediator of RNA polymerase II transcription subunit 6 isoform X1
SwissprotF4IXJ7.11.5e-70Mediator of RNA polymerase II transcription subunit 6
trEMBLA0A5P1EVU51.0e-92Mediator of RNA polymerase II transcription subunit 6

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G21350.165.703e-83 305MED6RNA polymerase transcriptional regulation mediator-related

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag537177.t1
Allium fistulosumAfisC5G01322; AfisC8G00224; AfisC8G00225
Allium sativumAsa6G06077.1
Arabidopsis thalianaAT3G21350.1; AT3G21350.2
Oryza sativaLOC_Os06g11370.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF04934.11Med6Family97222143.04.2e-42

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000428CDNA-directed RNA polymerase complex
GO:0001128FRNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0003712Ftranscription cofactor activity
GO:0003713Ftranscription coactivator activity
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0005667Ctranscription factor complex
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006351Ptranscription, DNA-templated
GO:0006352PDNA-templated transcription, initiation
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006367Ptranscription initiation from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0022607Pcellular component assembly
GO:0016043Pcellular component organization
GO:0016070PRNA metabolic process
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0016591CDNA-directed RNA polymerase II, holoenzyme
GO:0016592Cmediator complex
GO:0018130Pheterocycle biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0030880CRNA polymerase complex
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032774PRNA biosynthetic process
GO:0032991Cmacromolecular complex
GO:0034622Pcellular macromolecular complex assembly
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0043933Pmacromolecular complex subunit organization
GO:0044085Pcellular component biogenesis
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044464Ccell part
GO:0044798Cnuclear transcription factor complex
GO:0046483Pheterocycle metabolic process
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051123PRNA polymerase II transcriptional preinitiation complex assembly
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0055029Cnuclear DNA-directed RNA polymerase complex
GO:0060255Pregulation of macromolecule metabolic process
GO:0061695Ctransferase complex, transferring phosphorus-containing groups
GO:0065003Pmacromolecular complex assembly
GO:0065004Pprotein-DNA complex assembly
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070847Ccore mediator complex
GO:0070897PDNA-templated transcriptional preinitiation complex assembly
GO:0071704Porganic substance metabolic process
GO:0071824Pprotein-DNA complex subunit organization
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0090575CRNA polymerase II transcription factor complex
GO:0097659Pnucleic acid-templated transcription
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901576Porganic substance biosynthetic process
GO:1902494Ccatalytic complex
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1990234Ctransferase complex
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15128MED6; mediator of RNA polymerase II transcription subunit 6EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.