result

Gene information

Detail information of g537525

Location

Gene	Chr	Start	End	Strand
g537525	Scaffold_92501:HRSCAF_475587	210471	214366	-

Sequences

CDS

Protein

Gene

>g537525.t1
ATGTCAGAGAGGCAAATTGATCTAGGTTTGAAGGTAGGGCTTGGGGCCAAAGCGATTGCGCTAGCAAGGATTTTTTTCTTCTTTGGCATGATCAGACGAGGCGATGGAGAGAAGGGATTGGACAGAGGAAGTGATGCGGAGGAGAAAGAACGCGGTTAGATAGAAAAGGGTGAAAAGGAACAATCGCCATTTGAGGAGGAGCGGTCACCTTTTTATGCCCAGAAATCATTTCTTCTTAGCAAAAATTATAACCATTAAATATATTGATTTAAAATAAGTTTATTATGTTTTATTTATTTACTACCTCATACATTTTATAATGAATAAAAAATATCAAAATTTAAAATATATATATATATATATATATATATAGTATTAATCTTTTTAACATGAATTTTGATTAATTAGATCATTTAATATATATATTTTTTGGAATTTAAGCGGGGTTTTATAGAGGACCCTTACATCTTAATATTAATAAAATAAAGGTAACAATATACAAAAACTTGGATTATAGACAAAAACAAAACCATCCATGGTAAATTAATCTATCATCGTTGGAACTGTTAAGGGCCACAATTTTTTCCTGACAAGTAGAAGACACTCATATATAATGTGTGTAGAATTCTTTTGCTCGTTTCTAAATTGCCTTGTTGTTCTTTCTTACCAAATCACAGATATTTATGTCTTCAAAAGTAGGAGTAAAACCTTGGACTTCCCGTTTTTCCATCTTGTCGCTTGGAAGATTGAAAACCACTCATCGACACTTCAGGAGCATGACCTGTGATATCCATCTGCTTTCAACAGCTTTTTCCATATTCCATTGACATAACGACATTCAAAAAATAAATGCAGATTATATTCATTAGCAGAGCCGCAGAAATTGCACTAACATTGATCATTCCCATTCTAAATAGCTTGTCCTAAGTTAACAATGCATCTTTCAAGACCAGCCACATCAACAGATTTTGTCTTTGGTTTCCGGACGAGACCCAAATGCATGAGTGCCATGGGTCATTAACAGTATCATCAATCCTGGCTAGCAGTTTATAGATACGACTTATGGAGTGCTCCTTAGGAGGAAGCCCTCATAAAACCTTATCTCTTTCCGCAAATAAAAGCTTATACAGTTTTGCTTGCTCCCAAACAGCTTGAATATGAGTGTATTTTATAACTATTAATTGCTTAGACATTTTTATTATTCCTTGGCGATTCTATTTTGGACAAACTGCTGACTTTTATTAATACTTGGGTTCATTTAGATTCAAATTGGTTTATAAATTCATTGAGTGATAACGTCTTATTCAATTTCACATTTTAAACTAAGCATAAATAAAACAAACATTGATGCAAACAACATGCATTGCAATCAAATAAATAACAATCGCTTTAAGCGGAAAGCTAACTTCCAACTTCCGTGGCGCAACTCTACATACTAACAGATCAGGACACAATAATTCAATTCTAAGCCATCTAAGACCTTATTCATAATATCCATTAAATTTCAGTCTTTATAGAAGTTGATTACAACTTTAGAAAAAAAATTATTACAATAATTTATATAGCTATTAAATTTTTTACAAGTATGTCCCATTGATTATTCTAATAATCATTTATATTTACGTCCTAAATAAGAAATAAATTCTACCATGCACACTCAAGGGACGGGACTCTAAGTCTCACTAGTTATAGATCTCAATTCTATGTCAGTTATTTTATATAATGTTCCGAACATAGCTCTGATACCAAGCGGTAACAACCCGCTGCTATATCCATATTATCAAAGAACATTAAAAATAATGTCGTCTAATAACACGGAGAATATGGCTAGTTAAGAGCGATCTAATATGATTATATCTTCGGACTAACACTGACACGTCTTTATTACCTTTTGAGGATTTGAACTAAAAAATTTAACGTTTAAAGTATCAATACAAAGTAATAGACACACAGGTATAAAATATTCAGAATAGTATATAATATAAATAAATCAGAACCAAAGCCATAGATCACAGAAGAATAAATACATCATATACATAATAAAAATGTGAGTCTACAAAAATAACAATACTAGGCCGACATAAATATCTACAAACAATCCGTGATTATTGATCTTATCCGTTCATGCTACCAGTAATCTTGTGATAGGTCCTATTAAGTTGTTGAGCTTTCTCAAGCTTAGGAAGTATCCTGTTTATCCTATTATGGTTGTTAATACAGTATTCTTCTTAATCGTACCAGTAAGAGCTCAATCGAAGATCATTTGCCGGGTTCGAGGCCGAAGTTATATAACCCATCTTTTTTTTTTTCCTCCCCTCCCCCTATCTCCGCCCCCTCTCCTTCCCTCCCGTTTTTCCTCTCTGGTCCTCCCCCCTCTCCTCTTCGCCCTTACCCCCCCTCCTATCAATTATCTTTAAAAATTTGTTATTGTTACTTATTTGGGAAATTTTTATATAGTATTTGATGGAAAATAAAATAAATAAAATTTTAATATCAAATCAGTGATTCTGAATAATTGGGTTTGATTTTGATTGCAGTATCTTACTTTGTGGTAATGGGATAAGGCTAAATTTCTATTTATTTTAGTGACACAATAGTCAAAATGTAGATTTTGCAAGAAAAATAAAGTACTAAAAGCAAAAAAAGTTTTATGTGCTTTTGATTTAGTATACAAATAATATTCATACCTACTTTATATGTTTAATAATAAAAAATGGACAAAGTTTCAAATTTTAAACTGCAGGTTTGCTGAGGTGTGGCAAAAGCTGTAGATTAAGATGGACAAATTACCTGAGGCCTGATTTAAAAAGAGGATTGCTTTCAGATTCTGAGGAGAAACTGGTCATTGACCTTCATTCCCAACTGGGAAACAGGTACACTTATTTCTTCTATAAAATTATACATTATTTGGAAACTTGAATTAGCATTCAATTCATGCTTTTGCACTTCATTTTCTCCAACACAGTTTGAATGGGTTGAATATTATTTAACCGAATTCATTTAACATTTCACCGAACGTAACTTTGTACAAAACAGTGGGATCTAGCTGGATTTCAATTGATGGATTTCAGCAACTTTTTAAGCTACTAAATAGACTAAAATGCTACTAATGATTAGTACTACCATTAAAATACAACAATCTATTTGAAAGTTTCATAGTTATCCTGGGATCCACACTAATAAACTGATCAATACTATATGTTTTTTTCAATGAATCTAACTGTTAAGAATATGTGAATATGCAAGCTGACTTTTTAATCCAAATATGCCTTTGATTAATGCATTGTAGATGGTCAAAAATAGCATCTCATTTACCGGGAAGAACCGATAACGAGATCAAGAATCACTGGAACACTCACATAAAGAAGAAGCTAAAAAAAATGGGAATCGATCCTTTAACTCACAAACCCCTACCTTTAAGCCAGGAAAACGAGCAAAAAGATCAGAAAGAAGAAGAGAAAAACACAGGAAACAAAGAAGCCGAGAATGCAGTTGTAAATGAGATCGATAATGGCATTACAATTCAAGAATTCGATGAGTTTTGCACGGATGAAGTGCCTATGATACAACCTCATGAGATAATAGTTCCAGACATGGCCATGACTACAAATATCGATCGATGTACTTCGACTTCTTCGCAGTCTTCTTCGTTGTCGTCTTCGAATAACAACAACTGGGTGGAAAACGATATGGGATGGCATGAATCATCAATGGACTTGTGGGGGCTGGAAGACATTTTGAATTGGGACTCTTCGTTTTGCAGTAGTGATGATAACACTGGAAAGTTGGCAAATGAGCCTTTTGGCACTCAACACTATCAAAGTAGTGCTACTGCTGTTACTGCTGCTGGTAGTAATGCATTTGATCATGAATCCTGGAAGTTTGAGCTCTTCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020269974.1	1.1e-59	protein ODORANT1-like
Swissprot	Q9C7U7.1	4.5e-45	Myb-related protein 20
trEMBL	A0A5P1EJY4	8.2e-60	Protein ODORANT1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G16600.1	59.26	8e-49	191	AtMYB43;MYB43	myb domain protein 43

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g537525	AT5G16600.1	162	52	2	46	194	39	199	59.26	8e-49	191
g537525	AT1G66230.1	155	47	2	46	188	39	193	61.94	3e-47	185
g537525	AT4G12350.1	133	45	2	46	178	39	169	64.66	1e-40	163

Ortholog group

Species	Genes
Allium cepa	g537525.t1
Allium fistulosum	AfisC4G00467
Allium sativum	Asa4G00505.1
Arabidopsis thaliana	AT1G66230.1; AT4G22680.1
Oryza sativa	LOC_Os06g14670.1; LOC_Os08g33150.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	78	118	54.1	1.1e-14

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988	F	transcription factor activity, protein binding
GO:0000989	F	transcription factor activity, transcription factor binding
GO:0001067	F	regulatory region nucleic acid binding
GO:0001076	F	transcription factor activity, RNA polymerase II transcription factor binding
GO:0001134	F	transcription factor activity, transcription factor recruiting
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001158	F	enhancer sequence-specific DNA binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0035326	F	enhancer binding
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044087	P	regulation of cellular component biogenesis
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0047484	P	regulation of response to osmotic stress
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0048583	P	regulation of response to stimulus
GO:0048584	P	positive regulation of response to stimulus
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0080134	P	regulation of response to stress
GO:0097159	F	organic cyclic compound binding
GO:1901000	P	regulation of response to salt stress
GO:1901002	P	positive regulation of response to salt stress
GO:1901363	F	heterocyclic compound binding
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903338	P	regulation of cell wall organization or biogenesis
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:1990837	F	sequence-specific double-stranded DNA binding
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network