result

Gene information

Detail information of g53766

Location

Gene	Chr	Start	End	Strand
g53766	Scaffold_29973:HRSCAF_274034	532652	541194	-

Sequences

CDS

Protein

Gene

>g53766.t1
ATGCCGTCCATGCCGAAGAAGGGAGACGCAAACGATAGAACTCCGACAATAAGGATAACGGAGTGCATAAGCTGGAAACACGGGGGCACGCTATCGCCTAGTCATGAGATTAGGCATACGGCGAGGAGGAGGTAAGACATGCGAAAGCGAGAGGTGAAAAGGGGAAAAAATAAAAAGGAGAGAGCCGCGTCGGTTGGGTTTGAAAATCCAAGGAATGCCTGTGCGATCTAGAAATTCAACTCAGTGCTGTAGATAGATAATATAGATTGGGAGACCGTTCGGTTGCCAAAATTCAAGAAGGCCTGTGTGCTTTTGAAATCCAACTAACTAATAATATAATAGTATAGATAATAGATAGAAGGGAAAACCGACAGTATTGAAGAGAGTTGCACAGCATTTGCTTCTCATACTTAGGAATAGAATCGCCTATGGTAACAACTCATCATATAGACAAATAATTTTTTCTACCTAACATTATATACTTGAAAAATTGGAATAATGTACAGATTTGAAAATAGTTGAAATGTTAATATAGATATGGTGCACTATTGTGCTCGCTTGAACCAAGGATTTCAGTTCCATCTTCATAGGATGATTAGGATAAAATATTGTAGTAGTTTATGTTCCATATATTCTACCATTTATTTACTTTGTAACTATAATGTAAAGGATAAAATAGTGAAAAACTCTATCTTGCTTTGGCTGTTATACCTGTTCTACTACCAATGATTTAACAGTACATGCACCAACAAAATTTTACTCAAGGATTAGCATCTGAAGGTATTTGATATTTCATGAAATATTTCATCTTATGTTTTATTACTTGGAAGTTGGAACACCTTATGAAGTAAAGCAAGATGGTCTAGGGTTTTTGATATCTTTACTATCGGTTGTATTTGCGTGCTATACTGGAATACTTTTGCGACACTGTCTAGATAGCAGCAAGGCCTAAAGTTGTCCAGACACCGGTCAGGCTGCATTTTGAATACACATTTTTATAGTCTGATAAAATACACATTTATATTTATATTTCACCACACATTTATATTTATATTTTTATAGTCTGATAAAATACACATTTATATTTATATTTATATTTCACCACCCATTTTTATAGTCTGATAAAATACACATTTTTATAGTCTGATAAAATACACATTTATATTTATATTTCACAATTATAAAGTCAGTCAATTCATGCAAAATCCACTGGACGAACATTGGAAGGCAGTAAAAAGAATTCTAAGATACTTAAAGGGCACACCGAAACATGGATTGATCTTAGAATCATGTAAAAAATTGAACATTAATGGTTATGCAGATGCAGATTGGGCAACAGATACAGATATAGAAGATCTACAACAGGATACTGTATATTTTTAGGCACAAATCCTATATCATGGTGTTCAAAGAAGCAACCAACTGTTTCATAGTCTGATAAATACACAATAAACCAACACATTTATATTTTATTTCAAATACACATTTTTATACTAGAATTTGGGTATCAGACTATGAAACCGATTAAACATGGCTGGTTGTTTATATTGTTCCCATACATCAGTTTCAGGAATGTTCACTATAACCAGTCTATGTTAATTGTATATGGTGGTTAACGACTTTTCTTCATATAATTAAATATATTGGTTATTTTATTGTCACATTTGTTCTAATATAGTTTTAAAACTGAATTGCAAAATCATAAAATATATTAGTTATTTTATTGTTACATTTGGGTATCAACCTTGCTATGTCTGACAAGTGCAGCCTTACCATGTTTGGATAATTATTGGACATTTAAATATGTGATATGCATTGCATTGACAGTTTTCATTTCCTTATACTTGAAAAGTACTGGATCTTTTACATTCTTTATGTTTATGCATTTTTTATCACTTAGGTAAAATTTATTTTAGACTTTAATTATTTTAGTATTTGCAATAATTTTTTGCCTCAAAAAAGGTATTTATTTGTTATTATTATATGCCATACTTTCAGCCATCACAATCATCCTTGTTGTATCAATCAAATTGTTCAAGAAGATGGATGAGTTGGAGATATAGAACAAATGATTTTTTTTGGTTACATCATTCTCTTAATTTCAAATAGAGTTTGGATGAATTGAAAGTATTTTACTTTATTGAATTGATATCAGAAAAATGATGATACAAGGACTAATTACAAGTGTTGTATTACATTCTGTATTTATAAAAGAAATACTGTGCCTAATACATAAGAGGGCCTGTAAATTCTTCTGCTGTGTATTATGATAACATGTGAGATAACTTGGGCCGGGTCATTTAGTATTTGCTCGCCTTAACATAAGTGACCGAATGCAGATGATCCTTTCATTTGCCCCCTCAAACCCTACATAAGCTAGGGTTTGCAAGAGATAAAATAATGGCGCCGCCGACTTGAGTATTTCTCAAAATTCTTCGCGACTGATGGCGATGCTCTATTTGTATATGCCTTCTGCTCTTCTTTTGAGATGCTATGATACTCTGAGAACCATTAATTGGCGAATTTAATGAGATGTTGAAGACGTGCTCTCAGATAACTTGCAGATAAGTTACCGAAGCTTCTGTTCACTTGATTTTCTAGAGATATAACTTCGGATGATAACTAATTTTGATGAAAAACTTTGTTCGAGCCAAGATCATGATGAATATGAGGCTGAGGGTTGAGAATTCTTCAAGTGTTTGTCAGTTCTGGTGAGTTTCTTCTTTTAGCACCCTTAATTATTTCTTTTAGCACTCTTAATTATTGCCTCCATCCTGAGATACTGACTTCAGCTTCTGTTCGTTATTCGAGGTGATAATCTGATGGTACTCTGAGAATGCTGAAGTATTGATCTTTACTTTCTGTTTGAAACAATCAGAAAGTAAAGTTTTCATCTTTGGCCCGGATCATGGCTTTACCGCCGGTGTTCATTGTCGACGGTACGAACTTTGAGCTTTTGCTTGAAGAGGAGAAAGTTTTTCTTGGATAACGGTTTTGTCAGAATGTCGGCAATTTGGTAAGGCGCGGGTATATGGCTTACATTTAATCTATTGCTGGTGACTTGTTCTCTAACAAAATAAAGATCAATCTCCATATGCTTAGTTTTGCTGTGTAGAACTGGATTTGCAATAAGTAGAACTGTGCTAAGATTATCACACCAAATTGTAGGCTTGCTGTCAGTTTTGATTTAAGTTCACTCAAAAGTGATTTTATCCATAGTAACTCTGCTGTGGCATTTGCTACACTTCTGTACTCTGCTTCAGTACTAGACCTAGAAACAGTTGGTTGCTTCTTTGAACATCATGATATAGGATTTGTGCCTAAAAATATACAGTATCATGTTGTAGATCTTCTATATCTGTATCTGTTGCCCAATCTGCATCTGCATAACCATTAATGTTCAATTTTTTACATGATTCTAAGATCAATCCATGTTTCGGTGTGCCCTTTAAGTATCTTAGAATTCTTTTTACTGCCTTCCAATGTTCGTCCATTGGATTTTGCATGAATTGACTGACTTTATTTACACTGTAAGCAATTTCTGGTCTTGTAATTGTTGCATACTGTAATGTTTCAACAATGCTTCTGTAGTGTCTGTTGTTCTGTATTGCCTCTCCTTTATTTCTGGATAGATGTAAATTGCTTGCCATGGGTGTGGATAGAGCATTTGCCTTGTCCATTTTTGCCTTGACAAGAATTTCTGATATATATTTGTGCTGACTTAGTTGAATCATTGATGTAGACATTCGTTTGACTTCTATTCCCAGGAAATAATTTATGCACCCTAGATCTTTGATCGAGAATTCTTTATTAAGGTATTCAGTGAGTCTGTTGATCTCTGCCTCACTGTTGCCTGTTACAATAAAATCATCAACATATATTAATACATAGGTAATTTCAAGTTTACTGAATTTTGTGAATAAGGAATTGTCGGATTTAGTTGATGAATAGCCAAGGCTAATCAGTGTTGACTTCAGTTTATCAAACTAAACTCTAGGTGCTTGCTTGAGTCCATAAATTGCTTTGTTTAGCTTGCACACAAGTTTTTCGTTGCCTTTTTGTTTGAATCCCTGTGGTTGCTCCATGTATACTTCTTCCTGCAAAGTACCATTCAAAAAGGCATTATTTAAATCAAGTTGTTTGATAGTCCAGTCTCTACTTAAGGCAATTGTAAGTACTATTCTGATAGTAGAAGGTTTTCACAACAGGTGAACAAGTTTCATTGAAGTCAAAACCATTTTGTTGTGAATAACCTTTTGCTACTAGTCTTGCCTTATACTTAGAGACTGAACCATCGGGATTCTTCTTAATTTTGTATGTCCATTTACATCCAACGATGTTTTTTTGGATGGTAGAGAGACCAGAGTCCAGGTCTTATTTCGAATCAGTGCATTATATTCTTCCTGCATTGCAGTTTTCCATTTCTCATCTTGCACTGCTTCGAAATAAGTATCTGGTTCTCTGATTTCATTGACTGTATTATAAGTCTTTGGCTTGAATATTTCACTTTTGGCCCTTGTTATCATGTGATGACCAGTTGTTGCAGGTTGTTGATCATTGCTATCAATTATGGCTTCATTGTTACTAGATGATTGTGAATCATCTAATGATTGATGACTGCCTGATTGGATGTCAGAATCATGCTGTGCATCTTGAATTGGAACTTCAGACTCTAACTGCTCATGACCTAGTTCAACTCTGATCACTGTGTGTTGTGAGCCACTACTACCCTCAACAGGGATAGTGAATTGGGTATCCTGACTTGCTCTTGTATGAGATTGATTATCAATCTCTGAGTATTCTGGTAACTCAGGTATTGATGCTCTTGGATTGTAAATTTTTTGTGATGTTTTCACATCTGTTTTACTAAAAGGAAAAACATTTTCATTGAACACAACATGTCTTGATATAAAGATTTTTCCTTTGTCATCTAGACATTTATACCCTTTTTGTTTGTGGCATACCCTAGAAATGTGCATGGTGATGATCTGAAGCTTAACTTATGTTTGTTGTAGGGTCTTAAATAAGGAAAGCATAGACAACCAAAAACTTTCAAAGCTTGATAATTTGGTTTAATTCCCTGTAACTTTTTTATGGGACTTTTAAAATCTATGGCCTTAGTAGGCAGTCTATTGATTAAGTACACAGTTGTAGAAAAAGCATCAGGCCAAAATTTTAATAGTAGAGATGCCTGAGCAAGTAAGGTTAGACCAGTCTCAACTATTTTTCTATGTCTTCTTTCAACTAGACCGTTTTGCTCAGAAGTATATGGACATGTCGTTCTGTGAATTTATTCCCTTTTTTGAGAAGAATTATTTTAGAGGGTGAAACTCTGTTCCACCATCTGTTTTGTATAATTTTTACATTGCAACCTAGTTGATTTTCCACTTGTACTATAAATTGTTGCACTGCCTTGTAAGTTTCAGATTTTGATTTCAGAAAATAGATCCATACATATCTAGTGTAAGCATCAAAAAATGAAACATAGTATTTATACCCATAATCAGTGTTGATGGGTGCTGGCCCCCATAAGTCTATAGCAATTAGTTCTAGGGGTTTACTATATTCTGTTTGTGAGTTTGGAAATGCAAGTTTGTGGCTTTTTCCCAGTTGACAGTGTGTACAAACATATGGTAAAGGAATTTTTTCAAAAGAAATTGCATTATTGTTCAACACATGTTTAACAATGTTTACATTTGGATGACCTAGTTTATAATGACATATATCAAAGATCTTACAGTCATCTTTACATTTGATTTCAGAAACATTACAACATTTACCCTTAAATCCAGGGTTTCTTGACTTAGCTACATCAAATTTGTATAGTCCTCTAAATTCTCTACCCTGAAATAGAATTTCTCTTGTTAGAATATCTTTAACTAGACAATATTGTGGATTAAATTCAAAAAACACATTATTATCTTTTGCAAACTGAGATACGCTTAGTAAATTTTTTCTTATCAATAGAACTCTTAAAAGATTATTGAGATAAAGTTGTTTCTTACCAACAAGACTTGCATTTCCAGTGTGTGTAATTTTAATGGATTTACCATCCCTCATATGCATAGTATGTGTACCTTTGTATTCTTTGCTTTTTAAGTTTAGCTTGCTCAGATCATTTGTCACATGATTTGTAGCCCCATAATCTGGGTACCAGCATTCATCATGTATGTCTTCTAATTTTGCTGTGTCACAGTCTGTATTTTCTGATTGACTTCTCCGATTTGATTGAGTGTTGACCATGTTAGCATTTGGTTGATAGTTCTTTGCATTACTTGGCTGTTGTGGAACATAATTGCTATCATATCTGAAATAGTATCTGCTTGCTATATGTCCATATTTCTCGCATATCTGACATCGAATTCTGCTGTTGTTGTTGTTCTGTCTACCACCTCTGCCTCTTGCTCTGTTTTCCTGACTGCCTCTTTGACTGTTAAATTGATTTATGTTGTTGCTGTTCTTTCCCTGATTTTTGTTTCTACTATTACTGATGAAATTGGCTGTGAAATCTGAACTAGCAGTTTTCTTTTGCTATATCTACCTTCATGAGCAAGAAGGGTAGCATGAACATACTGAATTGTGGGAGTTGTTTCTTTAGAAGAAATTACTGCAACAACTGCTTCATACTCCTCATCTAGGCCATTTAGAATTGACAATATTTGTTCATAGTCAGAGATTTGTGTCCTGCCGAGGCCAGTTGATCACATAACATGTTGATTTTGGACAAATAATCTCTCATTGGTAGAGTGTCTTTCTTTAAGTTTTGCAACTGTCTTTTATAGAACATGACTTTTGCAGCGGATTGGGTATTGAACACTTGCTCAATAGTAGACCAGATTTCATTTGCGGACTTGCATTCAATTAATTGTGGTAGAAGATTAGAACTAATCGTAGAAAGTAACCAAGAACTTACTAGGCTATCTTGTCTTTGATGTGATATGAAATCTTGATTGCTTATTAGTTTCCCATCTTTATCTGTTACAAATCTGGGTGGTGCGATCAATGTTCCATGAACATAGTCCTCCAGACCATACCATTTAATTGCTGTTTCAACCTGAAATTTCCAGAGTAAAAAGTTTGATTCATCCAGTTGTACATTGATGATTTGACTTTGTGGTTTAACCAATGCCTTAATCAGATCTTGTGTTGCAGATCTTTGAGAAGTTGAATCTGAGTTTCTTGCTGTGGATGACTCCTCATCAGCCATTGAATAAAAACTGTGAAAGACAGATGTCTTCTTGAATCTGCAGTGTGATGATCAGCAGTGCAAGATGATCTTGAAATCAAGAAGACTGTAGGAATTAAAGATATGGAAATACTGATGCAGCCTGAAGTTAACTGGATGATGAAGACACTCTGACAGTTGCTTCTGGCGTGGCACAGATCAGAATCAGGTCAGATGAACTGATAAGATTCTTGATATCAACACAGGTATGACTGAAAATTTTTTTAGTATCAGATGATGAGAATCTTGATTCTTTGATGATCTTTGGTACGCAGCCTGATCTCTATGATGATATCAACTCTGAGAGATCAATGGCAAGACGCTTACCTTCTTACTTCTTACTGCTGTTAAGTGATGCTCTGATACCAAAATAGAGTTTGGATTAATTGAAAGTATTTTACTTTATTGAATTGACATCAGAAAAATGATGATACAAAGGACTAATTACAAGTGTTGTATTACATTCTGTATTTATAAAAGAAATACTGGGCCTAATACATAAGAGTGCCTGTAAATGCTTCCGCTGTGTATTATGATAACAGGTGAGATAACTTGGGCCGGGTTAGTTAGTATTTGCTCTCCTTAACATAAGTGACCGAATGCAGAGGATCCTTTCATTATTTCAAACAAGTATTCAATGCTACTATCATATTTGTCAATTTTTTTAATTATTTTGCTTTTCTTGGGTGAAATATTTCACGACCAACCGATGTGTCCCTTATTCCTAGTTAATCAAAACCTTTTAACGTGAATTTATTAAAATGAAAATTTGTAATTAACCAGAGATAAGATACATATGAAATGTGGAGAGATGTCCCCGATCTATATACGTGTATTCAGTGCTCATTCCCTATGAGGATTAACCCATTGTCTGTGCACAGGTTCCACCAATTGCAAGAATTTGACCAAGGAAAACGAAGTTGTTGCAGACACTTAGCTGGACACAATGAGCGTTATAGAAAGCCACTGCCTGGACCTTCCTATTATGGAAGGATGTCATCATCTGTCTATGGTTCACTTCTTATGCCTGAGTTAGTCGAACTTATGTCATATACACTTGTACATATGTGTAATTAAACTCTCTGCAATGCAACAATGCAGAAGGTGTAGCAGATTCAGACGATTCCTGATGGACTTCAGTTACCTGTGGCCCATACAGCCTTCTTCAAGAGATCATCTATGGCCTATACTGTCCAACGTCCATCAGTGCCTAGCAAACCTAAACACTGCATCTAACGTTTATGCTGCTCAACCGTACATGCATGCAATGAATCAAGAGCTTCCACCACATGGATACATGTCTACGGCCTCAGACTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267308.1	5.5e-13	squamosa promoter-binding-like protein 14 isoform X2
Swissprot	A3C057.2	2.3e-11	Squamosa promoter-binding-like protein 17
trEMBL	A0A5P1EQR8	5.2e-13	SBP-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G47070.1	50.00	7e-09	56.6	SPL1	squamosa promoter binding protein-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g53766	AT2G47070.1	56	28	0	44	99	152	207	50.00	7e-09	56.6
g53766	AT2G42200.1	49	14	1	44	87	120	168	61.22	8e-09	56.2
g53766	AT3G57920.1	50	17	1	44	89	105	154	58.00	1e-08	55.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03110.11	SBP	Domain	43	71	28.9	8.9e-07

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0008361	P	regulation of cell size
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009987	P	cellular process
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016043	P	cellular component organization
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0022603	P	regulation of anatomical structure morphogenesis
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032535	P	regulation of cellular component size
GO:0042127	P	regulation of cell proliferation
GO:0048366	P	leaf development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048466	P	androecium development
GO:0048608	P	reproductive structure development
GO:0048653	P	anther development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0065008	P	regulation of biological quality
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0090066	P	regulation of anatomical structure size
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development
GO:1900618	P	regulation of shoot system morphogenesis
GO:1901371	P	regulation of leaf morphogenesis
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000024	P	regulation of leaf development
GO:2000025	P	regulation of leaf formation
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905421
GO:1905428

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network