result

Gene information

Detail information of g537944

Location

Gene	Chr	Start	End	Strand
g537944	Scaffold_92560:HRSCAF_475646	520800	523618	-

Sequences

CDS

Protein

Gene

>g537944.t1
ATGAATAGCGTTAATGAAGTTGCAGATGATGAAGAAATGCACGAAGAAGAGAAGAAAAGAAGGCTGGGAAGCAACTCTCTAAAGAGAGGAGGAGCGGCTTCAGTATTTATTTGCTGTCAGGCCGAGAACTGCGATGCAGAACTGTCTGAAGCGAAGAAGTATCATAGAAGGCATAAGGTGTGCGAATTCCACTCGAAGGCTCCGGCTGTAGTGGTTGCTGGTTTGATTCAGAGATTTTGCCAGCAATGCAGCAGGTTTGGTCCTTTGTTCGTTACCTTAGAAGACTATTTTAATTTCATTTCATTATTCTAATGTTGTTTGGGACAGTTGTATCACATGTTATCCAGTTTTAGTCAAGGGTTTTGGTATACTTTCTTCAAAATATACCTTAAATTCGAAATAGTATAAACTAGATGTGGTTTTTAAGCTAAACTGTTTTATGATCATTCAAAAGTGTACCCAGTGCACAAGACTTTCTATTTGAACAGGATCGGTCTTACCCCATTACTGAATAGACTTTTATACCTACTGAACCTCTTAGTACTTGTTACATTGTAAAAACAATCGATAACTATAAAATTCTTGTTATGAATAAGTATGCTTGAAGCTAGTCAACATTGAACAATTAGAGTTTCATTGCAAACAAAGGTAACTATATAATTTTCTTCGTTCTTTTTTCCTTTTTCTGAAGAAATTGAAATTTCAAGATACTAAAGTCAGTGCCACTTCTTAGGATACTATACTAACCAGGTATTCTGAAAATGTTCAGGATTAAAACCTGAAATATATAACTGAAATATATGAATGGTAAAAAAAGAAAAAGGATATATAACTTCTTTATAATCTCTAAAATTTCTGCTATAACCTCTTTATAATCTCTAAATTTTCTGCTATAACTTCTTTATAGGCTCTAAAATTTCTTATGTGTTATCAGTTCCCAAACATTTAATTAAATGTTGTTGGACTTCAGATTTTCTTTTCCAGGAATTTTAGGCACACAACCTTCTTTTCAAGTTTATTAGGCAGCAGTCTCCTCCCCAAAATCAGTTTCACCAAACACCCTTTTCTTACTTTTCGATTTTTTTTTTCGGTTTTTACTATATTTTTATCTACGCTATTTTCTTGCTATATTTAATTTTTTTTTTTATTTTGTTTTGAAACTTTGAAGTTAAAGCTGCAAATATTTGAAAAAAAAATGTTAGAATCATTTTCTCAGAAGTAGCTCGGATTTTATGTTTGCAGGGCAGATCCAAGATGTTTCTCAGAAGTAGCTCGGATTTGAAAAACAAAAATTTATCGAAAATTACTAGAGTGGTATTTGGTGAAATAAGTTTTTGAAGGGGGCCACTATGCATTTTGAAACTTAGAGAATGGTGTTTCAACTTTCAATAACTATAAAATTCATTTTGTGAATAAGTAATGCTTGAAGCTAGTCGACATTGAACAGTTAGAGTTTCATTGCAAACAAAGGGAACCATAGAATTTTCTTGGGTCTTTTATTTATTTAATTAAGAAATTGAAATTTCAAGATACCAAAGTCAGTGCTAAAAAACACTTCTTAAAATACTATACTAACAAGGTATTCCGAAAATGTACCCGATTAAAACCTGAAATATGTGAATGACAAAAAAGAAAAAGGATACAACTTCTTTATAGTCTCTAAAATTTCTGCTATAACTTCTTTTAAATCTGTAAAATTTCTTATGTGTTCTCAGTTCTCAAACATTTAATTAATTAAATGCTGCTGGACTTCGATTTTCTTTTGTGAAAATTAGACATGCATCCTTCTTTTCAAACTCATAGGCGGTAATCTTCGCCCCAAACTTAGTTTCACCAAACACCCTCTCATCGGTTTCAGTTTCGTATCTAGATTTTTTATTATTATTATTATTATTATTTTTAATCTCCGCTATTTCTTTGATATTTTTTTACTTTTAAAAGATTTTTTTTGTAACTTTGAAATTAAAGCCGCAATTATTTAATAGAAAAAAAAATTCTTTTTCTCAAAAGTAGCTCGGATTTTATGTCGCTGCAGTGCAGATTCAAGATGTGAAAAAAATTGTTCAAAATAACTGGAGGGGTGTTTGCTAAAATTAGTTGGAAGAGACAGTCATGCATTTTGAAACTGGTGTTCAAAAAATCATATGTATTCTTTTCCTATGGCATAGGCCATAAAAGAAATTGTCTTGATTTTCAACCATACTGCATCTCTCTATATATGCTATGTAAAGAGAAATATAAGCAACCAAAATGTTTATTTTAAAGCCAAACAGCCTATACTAATAAACTGGAGTTTGAAAACCAACCAATACTTTAGTTATATCACATAAACATGAACATTCCCATTTTATCTGGAAATAATGCAACTTTGTAACAAACTGCATAGTTTAAAAATGTGTTCATAATATATATCTCATGAACAATATGAATCAGAATTTAGATCATATCCTACCCATTTTTGCAATATATCAGATAACTAATTAAGTAAATAACCAAATTGAATCCATACTTATGAGGTAACGCATTTTAGCTTTATCTATCTTCATGATCTAAAAAAAAGATCGATAATGTTTGATAATACCTTAAATAGGTTCCATGAGTTATCAGAATTCGATGACACAAAAAGAAGCTGCCGTAGAAGACTAGTAGGTCACAATGAGAGGCGCCGGAAAAGTTCAACTGAGTCCAAGGGTGAAGGATCCAGTCAATGCAGGCAAGCAGACCAAGATAGTAGTGGTGGAGGCACCAGAGTTGATATTCAAATAAATAGTATGACTGGAAGTAGTACTCCTGGCTATAAGCACTTTCAGATCAGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020091963.1	8.3e-41	squamosa promoter-binding-like protein 3
Swissprot	Q38740.1	1.3e-30	Squamosa promoter-binding protein 2
trEMBL	A0A6P5FEW2	6.0e-41	squamosa promoter-binding-like protein 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G60030.1	60.75	5e-34	140	SPL12	squamosa promoter-binding protein-like 12

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g537944	AT3G60030.1	107	36	1	18	124	112	212	60.75	5e-34	140
g537944	AT2G33810.1	89	29	0	28	116	43	131	67.42	2e-31	131
g537944	AT1G53160.1	98	29	2	26	122	44	138	66.33	3e-31	130

Ortholog group

Species	Genes
Allium cepa	g537944.t1
Allium fistulosum	AfisC3G00312
Allium sativum	Asa2G00463.1
Arabidopsis thaliana	AT1G53160.1; AT1G53160.2; AT2G33810.1; AT3G15270.1
Oryza sativa	LOC_Os07g32170.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03110.11	SBP	Domain	39	112	111.3	1.7e-32

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009909	P	regulation of flower development
GO:0009911	P	positive regulation of flower development
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010229	P	inflorescence development
GO:0010321	P	regulation of vegetative phase change
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022414	P	reproductive process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048367	P	shoot system development
GO:0048518	P	positive regulation of biological process
GO:0048580	P	regulation of post-embryonic development
GO:0048582	P	positive regulation of post-embryonic development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048831	P	regulation of shoot system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051094	P	positive regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051240	P	positive regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2000243	P	positive regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network