result

Gene information

Detail information of g539402

Location

Gene	Chr	Start	End	Strand
g539402	Scaffold_92732:HRSCAF_475818	528128	530410	-

Sequences

CDS

>g539402.t1
ATGACTCAACTTCTGCTAGATCGAATTAACAGTAAAGAATGGCTTTTTCTCTACCTAATTTCCAAAATTCTTGAGAAAAAAGCTACGATTAGTCTGATTATGTATCAGCATCAGTTTATCGATCCTTCACAGACTAATATTAATTACCTGGACTTATCACTGATGGGAAGCAGTGGTACAAGCAACAACAACAGTAGCTGCTTTGAAGCTGATCCTTCTTCTCTTTTCAGGATGTTGCAACCAAGTATTAATTTCAACGACATCGGTAGTTATCTGAATGAAAACATGTCCATTAGCGGAACTGTTTCCCCGACTTCAGCTGCAGTGTATTATGATCCTAATGCTGGCTTTAATTACTCATTAATCCCTAATAATGGGATTGACATCAATGGTCATGAGCACTTGTTAGAGTTTAAAGGAGAAGGTATTGATACATATGGTGGAGAGGTGAATGAAAATATTATGGTGAAATCAGGAGGTAAAAAGAGAAAAAATAGTGGAAATGGAGGTGTCAAAAATGAGAAGGATAGGAGGTTAAGGTTGAGCAAGCAGTATGAAGTTCTTAAAACAGTAATCCCAAATCCTACAAAGCCTGATAGAGCGACCATAGTACAAGACACGATTGACCACATCCACGAACTGCTGCGCACGATGGATGAACTGAAGCTTCTGATAGAGCAAAAACGTGTGAGAAAAATAAGCATGAATAGGCCTGAAATGATTAACGACACCTCAGGGGACAATGAGAGCTCATGTATGAAGCCAGTTCATGCATTGAAAGGCACTTTGAGGAGTTCATGGCTGCAAAGGAAGTCTAAGTACACCCATGTTGATGTTCGCATTGTGGAAGATGAGGTGTTCATCAAGCTGACACAGCATAAGAAGATCGACTGCTTGATGATTATTGCTCGAGTTTTTGATGAATTGGTGCTTGATCTCGTTCATATGTCTGGTGGAAATATTGGTGATCTTCATGTCTTCATGTTTAATACCAAGATACAAGAAGGGTCTTCAGTGTATGCAGGCGCAATTGCAAAGAAGATAATTGAAGCAATGGATGCTAACTATCCAGAACTGTTTGTTAGTTTCTAG

Protein

Gene

>g539402.t1
ATGACTCAACTTCTGCTAGATCGAATTAACAGTAAAGAATGGGTTACAATTGCATGATGGAAAGAGAAAGCTCAGTTATAATTGCATAATATACTGTATTATACTACTATACAGCTCTTCTGTATACTTTAATATCTCTCATTATCATTTGGCAGTAGTGTTAAAGATAGACCACACATGAAAACCTTCACTTTTGTAATTCATACAATTCATTATGCCATTCTTCTTAAAACAAGAGCAATAGCATCACGGGAACAAAACAAAGCTGCGTGCATATTTTACTATACTTGGAGTCAAAAAGGGTAGACGACTGCAGTGAAATAAATAAAATAAATATACAAGCATCAGAAATACGGAAGATTTTTTTAACTGACACGGAGTAGGGACCACAGTTAGGAAAATTTGCAGCGAGAGCAGGTAGAAGACTCAATGAGTAAGGAATCTCATAGTAACAAACTCAGCTCTTCTCATTACAAATAGGAAACAAGCTGCAATCTGTGTTATTTCTTCTGCTTTTTTGCTCTATTTATGTTCTCTACTTGGTTCAGCTTTTTCTCTACCTAATTTCCAAAATTCTTGAGAGTAAGTTCTATAATATAGAGCTTCCAAATTTGCTTTATTTGTTTCTTATCTGCTGTTAGGTTTTGGTTTAACCAGGTAGATTTTAGTGTAATATTTGATTCTTTACATGCTCAGCCATCAATTCCTGGACATAGCTAATACTTTTGGATCAAAATTTAAACTCATGTTTTAGTTTTCATCAATAATTTCTACTGAAAATCTATGCAGTAAACAAATAGGTAGTATGCTTTGGTTTTTGTTCTACTTTATATCATGCTCATCGCGTAATTTTAGTCCATAACACAGCCTAAGTATGTATGCTTTAAACTAGTTAATTCTGAGTTTGATCTTGGTGCAGAAAAAGCTACGATTAGTCTGATTATGTATCAGCATCAGTTTATCGATCCTTCACAGACTAATATTAATTACCTGGACTTATCACTGATGGGAAGCAGTGGTACAAGCAACAACAACAGTAGCTGCTTTGAAGCTGATCCTTCTTCTCTTTTCAGGATGTTGCAACCAAGTATTAATTTCAACGACATCGGTAGTTATCTGAATGAAAACATGTCCATTAGCGGAACTGTTTCCCCGACTTCAGCTGCAGTGTATTATGATCCTAATGCTGGCTTTAATTACTCATTAATCCCTAATAATGGGATTGACATCAATGGTCATGAGCACTTGTTAGAGTTTAAAGGAGAAGGTATTGATACATATGGTGGAGAGGTGAATGAAAATATTATGGTGAAATCAGGAGGTAAAAAGAGAAAAAATAGTGGAAATGGAGGTGTCAAAAATGAGAAGGATAGGAGGTTAAGGTTGAGCAAGCAGTATGAAGTTCTTAAAACAGTAATCCCAAATCCTACAAAGGTAACACTACTTACTTATCTTCATTGTTATTCAAATTACATGAATTACTAAATGAGTCTATATACATTTTCATTGTACGGGAAGCCTGATAGAGCGACCATAGTACAAGACACGATTGACCACATCCACGAACTGCTGCGCACGATGGATGAACTGAAGCTTCTGATAGAGCAAAAACGTGTGAGAAAAATAAGCATGAATAGGCCTGAAATGATTAACGACACCTCAGGGGACAATGAGAGCTCATGTATGAAGCCAGTTCATGCATTGAAAGGCACTTTGAGGAGTTCATGGCTGCAAAGGAAGTCTAAGTACACCCATGTTGATGTTCGCATTGTGGAAGATGAGGTGTTCATCAAGCTGACACAGCATAAGAAGATCGACTGCTTGATGATTATTGCTCGAGTTTTTGATGAATTGGTGCTTGATCTCGTTCATATGTCTGGTGGAAATATTGGTGATCTTCATGTCTTCATGTTTAATACCAAGGTATTTAATTGGTTTCTCTATATGGAGATACTTTTGGTAATATCAACTGTCGATATTCATCTGATAAATTTAGCGATTAAAACATAAAATCATACTGTAGAATTCTTTTTACACATAAATGTAACTTTTATATGTTTGTAAACTAGAGTTGGGTCACATAAATAACTAAAGACAGACTAATGTGTGGATTCTAACTAGTTTATGTTATAATCCAAGTAGACTTGCAAGTTACAATGTGCTCAACATTATGTTTGTTAAATGCAGATACAAGAAGGGTCTTCAGTGTATGCAGGCGCAATTGCAAAGAAGATAATTGAAGCAATGGATGCTAACTATCCAGAACTGTTTGTTAGTTTCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274493.1	1.1e-64	transcription factor EAT1-like
Swissprot	Q9LND0.1	1.3e-46	bHLH transcription factor bHLH089
trEMBL	A0A7M3UQL5	8.4e-83	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G06170.1	41.70	1e-50	197		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g539402	AT1G06170.2	271	145	6	95	358	142	406	41.70	1e-50	197
g539402	AT1G06170.1	271	145	6	95	358	142	406	41.70	1e-50	197
g539402	AT2G31210.1	314	118	10	96	356	128	419	38.54	4e-45	179

Ortholog group

Species	Genes
Allium cepa	g539402.t1
Allium fistulosum	AfisC6G06860
Allium sativum	Asa0G04216.1; Asa0G04217.1; Asa8G00149.1; Asa8G00850.1
Arabidopsis thaliana	AT1G06170.1; AT1G06170.2; AT2G31210.1; AT2G31220.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	172	214	26.9	3.2e-06

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network