result

Gene information

Detail information of g540214


Location
GeneChrStartEndStrand
g540214Scaffold_92822:HRSCAF_475908469802505312-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020276716.15.2e-294SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
SwissprotQ498E7.13.3e-96Sucrose nonfermenting protein 2-like 1
trEMBLA0A5P1EE843.7e-294SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G48310.164.020.0 875CHA18;CHR18chromatin remodeling factor18

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag540214.t1
Allium fistulosumAfisC2G04613
Allium sativumAsa6G02207.1
Arabidopsis thalianaAT1G48310.1
Oryza sativaLOC_Os07g44210.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily19342798.33.3e-28
PF00271.28Helicase_CFamily47558449.25e-13

Gene Ontology
AccessionOntologyName
GO:0000018Pregulation of DNA recombination
GO:0006260PDNA replication
GO:0051276Pchromosome organization
GO:0005515Fprotein binding
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000733PDNA strand renaturation
GO:0036292PDNA rewinding
GO:0036310Fannealing helicase activity
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003824Fcatalytic activity
GO:0017111Fnucleoside-triphosphatase activity
GO:0004518Fnuclease activity
GO:0004519Fendonuclease activity
GO:0004520Fendodeoxyribonuclease activity
GO:0004536Fdeoxyribonuclease activity
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005657Creplication fork
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0006261PDNA-dependent DNA replication
GO:0006275Pregulation of DNA replication
GO:0006281PDNA repair
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0006996Porganelle organization
GO:0008150Pbiological_process
GO:0008156Pnegative regulation of DNA replication
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009314Presponse to radiation
GO:0009411Presponse to UV
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0016043Pcellular component organization
GO:0016462Fpyrophosphatase activity
GO:0016787Fhydrolase activity
GO:0016788Fhydrolase activity, acting on ester bonds
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0033554Pcellular response to stress
GO:0031297Preplication fork processing
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031593Fpolyubiquitin binding
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032392PDNA geometric change
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043596Cnuclear replication fork
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0045005PDNA-dependent DNA replication maintenance of fidelity
GO:0045910Pnegative regulation of DNA recombination
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046483Pheterocycle metabolic process
GO:0048478Preplication fork protection
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051052Pregulation of DNA metabolic process
GO:0051053Pnegative regulation of DNA metabolic process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070530FK63-linked polyubiquitin binding
GO:0071103PDNA conformation change
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0090305Pnucleic acid phosphodiester bond hydrolysis
GO:0090329Pregulation of DNA-dependent DNA replication
GO:0097159Forganic cyclic compound binding
GO:0097617Fannealing activity
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901576Porganic substance biosynthetic process
GO:2000104Pnegative regulation of DNA-dependent DNA replication
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:0140030
GO:0140097

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14440SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1EC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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