result

Gene information

Detail information of g540917

Location

Gene	Chr	Start	End	Strand
g540917	Scaffold_92884:HRSCAF_475970	134441	137829	+

Sequences

CDS

Protein

Gene

>g540917.t1
ATGTATATAAAAATAAGTAACAACACTGCAATCCTCAAGACACCCTTCATCATGTCCATTCCATCATCCCTCCTCTTATTCTTCTCTCTTCTTATTTCTTCCACAAACTCCAAACCATGTCCACCATGCGGCACAACTCCGGTTCCATACCCGTTAAGCACAAACCCTTCATGCAACGACCCATCTTACCCGATAACATGTTCATCCAACTCCACTCTCATATTCAATGCGCTCAACTCCTCATCCTACCCCATATCTTCGGTTTCGCCCTCTACTCAAAGGCTGGTCATACAACCCGCTCCGTTCAGGCCCAACACTTGTGTCACAACCGACCTGCATTCTCATGGCATCGCACTTAACGCTTCCATGCCCTTTAACGTCTCCAGCAGCAATACAATCATGCTGTTAAACTGCTCTGCGAGGGTCTTGCTTTCACCTTTGAACTGCTCGAGCAATAGTCTCTGCCATGTTTATGTTAACGCTACTCCTGCTGCCTCCGCTTGTACACAGCTTCCCATTTGCTGCACTTTTCAGGTACCCTTAACAAAGAAATACATTTCCCCCCCTTATATATTGATTTTATAGCTTTGTTTATGTAAAACAGACGGGAGGGTCATCGACAGCATATGCTGTAAGGGCTAGCGGAGTAAATGGGTGCAGTGCTTATAGGAGCTTTGTTAATTTGAACCCGTTAACAAGACCAAACAGTTGGGGAAGTATGCAGGGAGTGGAGTTGCAATGGGCCACACCACATGAACCCGTTTGTCGAACACAAGTGGACTGCGAGGATGGAGTCAATGCCACGTGTAAGGTGGATGTTGCAAGTGGGAATGGGATCAAACGGTGCTTCTGTAATCAAGGTTTGACATGGGATCCTATTACTGGCACCTGTGCTCTCAGTAAGTAGTCGTCGATCTTTCTACTTCTGTTGTTCATCATTTAGTTCTAGTAATTTGAATTTGATAATCTGTATTGACTATTAACTCACAAACAAACAATTGAAAAGTGGTAGTAAGGTTTTGCTGGTATTGAAATAGTTTGCTGACTTTGTTTCCCTTGTTGCTTTGAAGTTAAAACAGGGTGTGAAGCAGATGATAGCTGTAAGTCAGCAAACAGAGCACCTCTAATTGCAGGTCAGATTTGAATTCTTTATTCAAAATTAATTTTATTTGTTGAAAATTGACTTTGAATCATTCAATGAAGTTGGCAGAACGAGAGTCTAACTAGAGTTCAAGATATATTTTCTTTTTTTATTCAAGCATTCAAACATTTAGAATAAAATTTTGGTAGATTCTTTGAATTCAAGGAACTTACAGTTACATAATATTTTAGAATTCTTATAGTCAAGTCTTGTACAATAAGCATGATAGGAACAATAACCACCCATACAAGCTTAAAACTTTATGTTAGCAATTTGTTTAGTTGGTTATTTTACATACAAGTCTGGTTCATTCAATGCTAAAAAATAATTTGATCAATAGAAAAGCAACATTAATCAAGTGGATCACCCACCACTGATAAATTATAAAATTTAATAAAGCAGACTAATTATGATATGGATCGATTTGGTGAATACAACAACCAACATCAGAAACATTGACCCTAAATTTGAATAACACATACCTAGCTATATACAAGACCAGTTATATGAGCTTTCTTGATATATTTTTTGGTGCAACTGTAAAGCATCCACATTTCATCTTCATTCACTCACGGGTTCATACAAAATTAATTTTAAATCTAAAAAACTTCATTGCATGTGACAAAATCTCTAGCATCCACATCTCAAAGTGATAATCTTCGATTCACGTGCTAGACAGAGATTTTTACAAAATCGACACTTGGCTTTGGGAGACTGCATAATGATTTTTATTATTGTTCAAGTGGCATTATGAATGAATTTGTCACTTTTTTTTAACTTAAATGCTAGAAGACTCGAAACAAATTAGGGCAAACTGTCATGCATGGAGATAAAAAATTATGGAAGACCTGAATTCCTATTTTTTCCTCAAATTTTGTTTCCATTCTGACTTTACTGGCCTTGGATACTTTTTTTTAAAACCCTGAGTAAATATTTTTCGATTTGTATATATCTAATTCCAGATTCCTTATATACAATACATACCAGGTTTAATATGCGGGATAATAGTAGCAGCACTCCTTGCCACCGCCTTCTTCTTCCTCTACCGTCGCCAGCGTCGCATCAGAGAAACACGCGAACGCATCGCAAAGGAAAGACAAGACATTCTTAACCTCAACAACTCTAGTGGTCGTTCTGCTAAAAACTTCACTGCACGCGACCTGAAGCGTGCCACCTCCAATTTCTCAAACGAAAACCTTCTAGGCATTGGAGGCTACGGTGAGGTCTACAAAGGACACTTAGACGATGGAACCCTTATCGCAGTCAAATGTGCCAAATTAGGAAACACGAAATCCACTGACCAAGTCCTAAATGAAGTCAGAATACTCTCACAAGTTAATCATAGAAGCCTAGTTCGCCTTCTAGGCTGCTGTGTCGACCTCGAGCAACCTCTCATGGTGTACGAATTCATTTCAAATGGTACGTATTTCATTGATCTGCACTACAAGTATAGTCTGACCACTATAGAACACCTTTTTTGAGATTTACCTGTTACAGCAGTTAATTTAGTAGATATGCAGTAGAAGTTAAAAGTATCCAAATAATTTATTTAGTGAATTATCTCTATAAAACACATTTTGTTGAGATTTTTTGTTGATTGGAATCATTTTAAATAGGTACACTATATGACCATCTTCATGGGAACCTTCAATCGCCGATTTTAACATGGAAAAGGAGACTTGCTATAGCATATCAAACAGCAGAAGGACTAGCTTACCTGCACTCATCGGCAGTGCCTCCAATTTACCACAGGGACGTAAAATCAAGCAACATTTTACTGGACGATAAATTCAATGCAAAAGTGTCGGATTTTGGGCTTTCTAGACTGGCCGAGCCAGGGCTCAGCCATGTGTCGACCTGTGCACAGGGGACGCTTGGGTACCTCGACCCGGAGTATTATAGAAATTACCAGCTGACCGATAAGAGCGACGTGTACAGTTATGGAGTGGTGCTTTTGGAGCTGCTTACTTCGAAGAAGGCGATTGATTTTGGAAGAGGGATGGATGACGTGAATTTGGCAGTGTATGTGGGGAGGAAAGTGGAGGAAGATAGATTGATGGACGTTGTTGATGGGTCGTTGAAGGAAGGGGCGACTACGGTGGAGTTGGATACGATGAAGGCGATAGGGTTTTTGGCAATGGGGTGCTTGGAGGAGAAGCGGCAGAATAGACCATCGATGAAGGCGGTGGCGGAGGAGATTGAGTATATTATGAGTATTGAAACTGGTGCTGGAGAGAACAATAACTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010937552.1	3.0e-254	wall-associated receptor kinase-like 20 isoform X1
Swissprot	Q9LZM4.1	7.5e-170	Wall-associated receptor kinase-like 20
trEMBL	A0A6I9S5R8	2.1e-254	wall-associated receptor kinase-like 20 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G02070.1	52.27	0.0	632		Protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g540917	AT5G02070.1	616	272	10	40	642	43	649	52.27	0.0	632
g540917	AT3G53840.1	643	284	13	23	640	14	636	48.83	8e-170	594
g540917	AT1G79680.1	391	211	7	261	641	327	709	41.43	8e-82	301

Ortholog group

Species	Genes
Allium cepa	g540917.t1
Allium fistulosum	AfisC3G04440
Allium sativum	Asa2G03790.1
Arabidopsis thaliana	AT5G02070.1
Oryza sativa	LOC_Os05g25390.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13947.3	GUB_WAK_bind	Domain	39	139	34.2	3.2e-08
PF07714.14	Pkinase_Tyr	Domain	366	635	157.3	3.9e-46

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network