result

Gene information

Detail information of g54647


Location
GeneChrStartEndStrand
g54647Scaffold_30228:HRSCAF_27709316994921708792-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020100376.11.7e-262FACT complex subunit SSRP1
SwissprotO04235.12.8e-241Recombination signal sequence recognition protein 1
trEMBLA0A6P5FVL81.2e-262FACT complex subunit SSRP1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT3G28730.168.670.0 864ATHMG;HMG;NFD;SSRP1high mobility group

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Ortholog group
SpeciesGenes
Allium cepag318220.t1; g54647.t1
Allium fistulosumAfisC3G01518; AfisC5G06276
Allium sativumAsa4G05158.1; Asa4G05192.1
Arabidopsis thalianaAT3G28730.1
Oryza sativaLOC_Os01g08970.1; LOC_Os01g08970.2; LOC_Os05g08970.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03531.11SSrecogDomain76291258.92.7e-77
PF08512.9Rtt106Domain34944282.22.5e-23
PF00505.16HMG_boxDomain56162983.68.7e-24

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000741Pkaryogamy
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0000791Ceuchromatin
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005654Cnucleoplasm
GO:0005694Cchromosome
GO:0005719Cnuclear euchromatin
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006996Porganelle organization
GO:0006997Pnucleus organization
GO:0007275Pmulticellular organism development
GO:0008023Ctranscription elongation factor complex
GO:0008150Pbiological_process
GO:0009553Pembryo sac development
GO:0009559Pembryo sac central cell differentiation
GO:0009561Pmegagametogenesis
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009987Pcellular process
GO:0010197Ppolar nucleus fusion
GO:0010228Pvegetative to reproductive phase transition of meristem
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0016043Pcellular component organization
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032991Cmacromolecular complex
GO:0035101CFACT complex
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0048229Pgametophyte development
GO:0048284Porganelle fusion
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09272SSRP1; structure-specific recognition protein 1EC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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