Detail information of g55134


Location
GeneChrStartEndStrand
g55134CHR47761120377628929+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020256981.11.8e-55ethylene-responsive transcription factor 1-like
SwissprotQ9LUM4.22.9e-31Protein RELATED TO APETALA2 2
trEMBLD6MKN85.9e-53Transcription factor (Fragment)

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G53910.336.649e-30 127RAP2.12related to AP2 12

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag55134.t1; g71620.t1
Allium fistulosumAfisC4G02015
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00847.17AP2Domain11416347.61.3e-12

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0001666Presponse to hypoxia
GO:0003032Pdetection of oxygen
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0016020Cmembrane
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006950Presponse to stress
GO:0008150Pbiological_process
GO:0009593Pdetection of chemical stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009889Pregulation of biosynthetic process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0036293Presponse to decreased oxygen levels
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051606Pdetection of stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070482Presponse to oxygen levels
GO:0070483Pdetection of hypoxia
GO:0071944Ccell periphery
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1903506Pregulation of nucleic acid-templated transcription
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000280Pregulation of root development
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09286EREBP; EREBP-like factorEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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