Detail information of g60621


Location
GeneChrStartEndStrand
g60621Scaffold_31948:HRSCAF_299975103481113764-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020094088.10.0e+00probable helicase CHR10 isoform X2
SwissprotF4IV45.19.6e-309Protein CHROMATIN REMODELING 10
trEMBLA0A6P5FKY70.0e+00probable helicase CHR10 isoform X2

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G44980.262.030.01121ASG3;CHR10SNF2 domain-containing protein / helicase domain-containing protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag60621.t1
Allium fistulosumAfisC7G05584
Allium sativumAsa3G00693.1
Arabidopsis thalianaAT2G44980.1; AT2G44980.2
Oryza sativaLOC_Os03g01200.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily92377165.71e-48
PF00271.28Helicase_CFamily40152252.74e-14

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0051276Pchromosome organization
GO:0000166Fnucleotide binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003678FDNA helicase activity
GO:0042623FATPase activity, coupled
GO:0016020Cmembrane
GO:0003824Fcatalytic activity
GO:0004003FATP-dependent DNA helicase activity
GO:0017111Fnucleoside-triphosphatase activity
GO:0004386Fhelicase activity
GO:0005829Ccytosol
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005654Cnucleoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0016887FATPase activity
GO:0006259PDNA metabolic process
GO:0006281PDNA repair
GO:0006289Pnucleotide-excision repair
GO:0006293Pnucleotide-excision repair, preincision complex stabilization
GO:0006294Pnucleotide-excision repair, preincision complex assembly
GO:0006296Pnucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006325Pchromatin organization
GO:0006338Pchromatin remodeling
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0006996Porganelle organization
GO:0008026FATP-dependent helicase activity
GO:0008094FDNA-dependent ATPase activity
GO:0008150Pbiological_process
GO:0009987Pcellular process
GO:0022607Pcellular component assembly
GO:0016043Pcellular component organization
GO:0016462Fpyrophosphatase activity
GO:0016787Fhydrolase activity
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0033554Pcellular response to stress
GO:0031334Ppositive regulation of protein complex assembly
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032392PDNA geometric change
GO:0032508PDNA duplex unwinding
GO:0033683Pnucleotide-excision repair, DNA incision
GO:0034622Pcellular macromolecular complex assembly
GO:0034641Pcellular nitrogen compound metabolic process
GO:0036094Fsmall molecule binding
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043233Corganelle lumen
GO:0043254Pregulation of protein complex assembly
GO:0043933Pmacromolecular complex subunit organization
GO:0044085Pcellular component biogenesis
GO:0044087Pregulation of cellular component biogenesis
GO:0044089Ppositive regulation of cellular component biogenesis
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044428Cnuclear part
GO:0044444Ccytoplasmic part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051128Pregulation of cellular component organization
GO:0051130Ppositive regulation of cellular component organization
GO:0051716Pcellular response to stimulus
GO:0065003Pmacromolecular complex assembly
GO:0065004Pprotein-DNA complex assembly
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070035Fpurine NTP-dependent helicase activity
GO:0070911Pglobal genome nucleotide-excision repair
GO:0071103PDNA conformation change
GO:0071704Porganic substance metabolic process
GO:0071824Pprotein-DNA complex subunit organization
GO:0071840Pcellular component organization or biogenesis
GO:0071944Ccell periphery
GO:0090304Pnucleic acid metabolic process
GO:0090305Pnucleic acid phosphodiester bond hydrolysis
GO:0097159Forganic cyclic compound binding
GO:1901265Fnucleoside phosphate binding
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:0140097

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K20092CHD1L; chromodomain-helicase-DNA-binding protein 1-likeEC:3.6.4.12 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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