Gene | Chr | Start | End | Strand |
---|---|---|---|---|
g60621 | Scaffold_31948:HRSCAF_299975 | 103481 | 113764 | - |
CDS |
Protein |
Gene |
Database | accession number | e-value | annotation |
---|---|---|---|
nr | XP_020094088.1 | 0.0e+00 | probable helicase CHR10 isoform X2 |
Swissprot | F4IV45.1 | 9.6e-309 | Protein CHROMATIN REMODELING 10 |
trEMBL | A0A6P5FKY7 | 0.0e+00 | probable helicase CHR10 isoform X2 |
TAIR id | % identity | e-value | bit score | gene aliases | Short description |
---|---|---|---|---|---|
AT2G44980.2 | 62.03 | 0.0 | 1121 | ASG3;CHR10 | SNF2 domain-containing protein / helicase domain-containing protein |
Species | Genes |
---|---|
Allium cepa | g60621.t1 |
Allium fistulosum | AfisC7G05584 |
Allium sativum | Asa3G00693.1 |
Arabidopsis thaliana | AT2G44980.1; AT2G44980.2 |
Oryza sativa | LOC_Os03g01200.1 |
Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
---|---|---|---|---|---|---|
PF00176.20 | SNF2_N | Family | 92 | 377 | 165.7 | 1e-48 |
PF00271.28 | Helicase_C | Family | 401 | 522 | 52.7 | 4e-14 |
Accession | Ontology | Name |
---|---|---|
GO:0005886 | C | plasma membrane |
GO:0051276 | P | chromosome organization |
GO:0000166 | F | nucleotide binding |
GO:0005622 | C | intracellular |
GO:0005575 | C | cellular_component |
GO:0008152 | P | metabolic process |
GO:0003674 | F | molecular_function |
GO:0003678 | F | DNA helicase activity |
GO:0042623 | F | ATPase activity, coupled |
GO:0016020 | C | membrane |
GO:0003824 | F | catalytic activity |
GO:0004003 | F | ATP-dependent DNA helicase activity |
GO:0017111 | F | nucleoside-triphosphatase activity |
GO:0004386 | F | helicase activity |
GO:0005829 | C | cytosol |
GO:0005488 | F | binding |
GO:0005623 | C | cell |
GO:0005634 | C | nucleus |
GO:0005737 | C | cytoplasm |
GO:0005654 | C | nucleoplasm |
GO:0043231 | C | intracellular membrane-bounded organelle |
GO:0006139 | P | nucleobase-containing compound metabolic process |
GO:0016887 | F | ATPase activity |
GO:0006259 | P | DNA metabolic process |
GO:0006281 | P | DNA repair |
GO:0006289 | P | nucleotide-excision repair |
GO:0006293 | P | nucleotide-excision repair, preincision complex stabilization |
GO:0006294 | P | nucleotide-excision repair, preincision complex assembly |
GO:0006296 | P | nucleotide-excision repair, DNA incision, 5'-to lesion |
GO:0006325 | P | chromatin organization |
GO:0006338 | P | chromatin remodeling |
GO:0006725 | P | cellular aromatic compound metabolic process |
GO:0006807 | P | nitrogen compound metabolic process |
GO:0006950 | P | response to stress |
GO:0006974 | P | cellular response to DNA damage stimulus |
GO:0006996 | P | organelle organization |
GO:0008026 | F | ATP-dependent helicase activity |
GO:0008094 | F | DNA-dependent ATPase activity |
GO:0008150 | P | biological_process |
GO:0009987 | P | cellular process |
GO:0022607 | P | cellular component assembly |
GO:0016043 | P | cellular component organization |
GO:0016462 | F | pyrophosphatase activity |
GO:0016787 | F | hydrolase activity |
GO:0016817 | F | hydrolase activity, acting on acid anhydrides |
GO:0016818 | F | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
GO:0033554 | P | cellular response to stress |
GO:0031334 | P | positive regulation of protein complex assembly |
GO:0031974 | C | membrane-enclosed lumen |
GO:0031981 | C | nuclear lumen |
GO:0032392 | P | DNA geometric change |
GO:0032508 | P | DNA duplex unwinding |
GO:0033683 | P | nucleotide-excision repair, DNA incision |
GO:0034622 | P | cellular macromolecular complex assembly |
GO:0034641 | P | cellular nitrogen compound metabolic process |
GO:0036094 | F | small molecule binding |
GO:0043170 | P | macromolecule metabolic process |
GO:0043226 | C | organelle |
GO:0043227 | C | membrane-bounded organelle |
GO:0043229 | C | intracellular organelle |
GO:0043233 | C | organelle lumen |
GO:0043254 | P | regulation of protein complex assembly |
GO:0043933 | P | macromolecular complex subunit organization |
GO:0044085 | P | cellular component biogenesis |
GO:0044087 | P | regulation of cellular component biogenesis |
GO:0044089 | P | positive regulation of cellular component biogenesis |
GO:0044237 | P | cellular metabolic process |
GO:0044238 | P | primary metabolic process |
GO:0044260 | P | cellular macromolecule metabolic process |
GO:0044422 | C | organelle part |
GO:0044424 | C | intracellular part |
GO:0044428 | C | nuclear part |
GO:0044444 | C | cytoplasmic part |
GO:0044446 | C | intracellular organelle part |
GO:0044464 | C | cell part |
GO:0046483 | P | heterocycle metabolic process |
GO:0048518 | P | positive regulation of biological process |
GO:0048522 | P | positive regulation of cellular process |
GO:0050789 | P | regulation of biological process |
GO:0050794 | P | regulation of cellular process |
GO:0050896 | P | response to stimulus |
GO:0051128 | P | regulation of cellular component organization |
GO:0051130 | P | positive regulation of cellular component organization |
GO:0051716 | P | cellular response to stimulus |
GO:0065003 | P | macromolecular complex assembly |
GO:0065004 | P | protein-DNA complex assembly |
GO:0065007 | P | biological regulation |
GO:0070013 | C | intracellular organelle lumen |
GO:0070035 | F | purine NTP-dependent helicase activity |
GO:0070911 | P | global genome nucleotide-excision repair |
GO:0071103 | P | DNA conformation change |
GO:0071704 | P | organic substance metabolic process |
GO:0071824 | P | protein-DNA complex subunit organization |
GO:0071840 | P | cellular component organization or biogenesis |
GO:0071944 | C | cell periphery |
GO:0090304 | P | nucleic acid metabolic process |
GO:0090305 | P | nucleic acid phosphodiester bond hydrolysis |
GO:0097159 | F | organic cyclic compound binding |
GO:1901265 | F | nucleoside phosphate binding |
GO:1901360 | P | organic cyclic compound metabolic process |
GO:1901363 | F | heterocyclic compound binding |
GO:0140097 |
KO | Name | Enzyme ID | Pathway | Pathway ID |
---|---|---|---|---|
K20092 | CHD1L; chromodomain-helicase-DNA-binding protein 1-like | EC:3.6.4.12 | - | - |