result

Gene information

Detail information of g61054

Location

Gene	Chr	Start	End	Strand
g61054	Scaffold_32119:HRSCAF_302078	769446	770762	+

Sequences

CDS

>g61054.t1
ATGGTCACCACGCCAAATTCCAAAAAACACTCCTCTCTTCCTCCTCCTTCTCCCTCCCGTCCTCCTTCTCCTCACATGTGCAAATCCAAAAAGTCCACTTCAACCTCCCCCTCCCTCTCCAATCCACACCCTAAATCCCCATCCACATCGACCTCTGCACACACAGCCACCACCAAGTCCTTCCCCACAACAAACGCCACCAATTCCTCTTCCCTCTCCTCCTCCTCCCTTTCCGCCCTCCGCCTCTCCCTCCCTCAAGACAGCCCCACTCTCTTCCGCTTCCCCGAAATCGCCTCCGCTACCAACAACTTCCTCTCCAAACGCCTCCCCTCCTCCTCCTCCTCGTCCTGGCGCTGCACACTCCGATCCCGCGACTCCGTCGTTTTCCAACGCTCCTACAACGGCAACCCCGACGATCTCCTCTCGCAGGTCTCCAAGTTCTGCAAGTTCCACCACAGCAGCCTCATCAAGCTCCTCGGTGTCTCCATCAGTGGCGACAACCACATCTACCTCGTCTACGAGTACGTCGCAGGCGCCAGCCTGCTCCACTGTTTACGTAACCCTAGAAACCCTAATTTCACCCCTCTCTCGAAGTGGATGTCGAGGATGCAGGTCGCCACCGATTTAGCTGATGGATTAAGCTACATCCACAGCCAGTGTAAAACCGTTCATAACCGGATTAAGAGCTCCAGCGTGATTGTCACGGAACCCAACTTCAACGCTCGGATCTGCCACTTTGGTTCAGCGGATCTAGCCGGAGAAGTTCCTGAAACTGAAACCGAGGACGTGTCCATTGATTCTTCGCCTAAGGTGTACAGGAGATCAAACAGCCGTACGATGAAGATTGAAGGGACAAGAGGGTACATAGCTCCAGAAGTGATCAACGGCGGTAAGATCTCATTCAAATCCGACATATACGCGTTTGGGATAGTCATACTGGAGCTGTTATCGGGGCGAGAGCCGTTAAAATACACTATGAACAGACAAACAAAAGACTACGAGAGAGTATCATTGATAGAGACAGCGAGAGAGTTAATGGGACTGGAAGACGAGCATGGAGATTTGGAAATGGAGGAGGAGGAGAGAAGAGGGAAGGTTAGGAGGTGGGTTGACCAGAGGTTACGGGACTCGTATCCGGTTGAGGTGGCGGAGAGGCTGATATACGTTGCTCTTCGGTGCGTTGAGGAAAAAGCGTTCATGAGGCCGGACATGACATGGGTTGCTGGAAAGGTTTCGAAGCTGTTTCTGGATTCACAGGTTTGGCAAGAAAGAGTAAACGTCCCTACTGACTTTTCCGTCTCACTTGCTCCAAGATAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010940615.1	1.2e-121	lysM domain receptor-like kinase 3
Swissprot	F4IB81.1	7.1e-39	LysM domain receptor-like kinase 3
trEMBL	A0A6I9SBW6	8.5e-122	lysM domain receptor-like kinase 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G57120.1	51.17	4e-99	358		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g61054	AT3G57120.1	383	154	8	75	438	88	456	51.17	4e-99	358
g61054	AT1G51940.1	339	198	8	87	422	324	634	32.45	1e-39	160
g61054	AT2G33580.1	370	220	11	55	422	323	651	28.92	3e-33	139

Ortholog group

Species	Genes
Allium cepa	g61054.t1
Allium fistulosum	AfisC4G07104
Allium sativum	Asa5G05923.1; Asa5G05927.1
Arabidopsis thaliana	AT3G57120.1
Oryza sativa	LOC_Os02g57440.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	142	346	87.8	6.8e-25

Gene Ontology

Accession	Ontology	Name
GO:0005575	C	cellular_component
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0042742	P	defense response to bacterium
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009617	P	response to bacterium
GO:0043207	P	response to external biotic stimulus
GO:0050896	P	response to stimulus
GO:0051704	P	multi-organism process
GO:0098542	P	defense response to other organism

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network