result

Gene information

Detail information of g62878

Location

Gene	Chr	Start	End	Strand
g62878	Scaffold_32631:HRSCAF_307858	413123	414187	+

Sequences

CDS

>g62878.t1
ATGAACGGTGTATTCCAAGCGCTAATCGCCGCCACAGTCAGCTTCCTACTAATCACATTCATCTTCCTGTTCTTCACCCTCCTCTGCCGCCGGCGCCCGCGGCCTAAACCCGCAACCCAATCCTCACCAAACCATCCACGCGTCCCATCCACCTTCTCCTCCTTCTCGCCTTCCCTCCCCCGCATCTCCCTCTCCACTGTCGCCGCCGCCACCTCCAACTTCTCCCCTTCCCTCATCCTCGGCGACGGCGCCTTCGGCTACGTCTACAAAGCCACCCTCCCCACCAACCTCACCGTCGCCGTCAAAAAGCTCGAACCCACCTTCGCCTTCGACCACGACGGCGACCGCGAGTTCCGCGCCGAACTCGAAACCCTAGCAAAGATCCGCCACCCGAACCTCATCAAACTCCTCGGATTCTGCTCCTCCGGCACAGATCGTGTCATCATCTACGAGTTTATTCAAAACGGTAGCCTGGATTCCTGGATCCACGAATCGGACACAAATCCAAGCCAGCTAACTTGGAGAACCCGGTTCCAGATAATTCTAGGAGTAGCCAGAGGTTTGTCTTTCCTTCACAATGAGTGCACACCATGTATTATACACAGGGACATAAAGTCAAGCAACGTGTTATTGGATGCGGGTTTTGAATCCAAGATAGCAGATTTCGGACTTGCGAGGATGGTGGGACCCGAGAAGTCCTACGTGTCGACCCAAACGGCAGGGACTGTAGGTTACCTGCCTCCCGAGTATATGGAAGGGTTTAGGGTAGCCAGTGTAAAGGGAGATGTATATAGTTTTGGGGTCTTGATGCTTGAAGTGGTTAGTGGAAGGAGACCGAATTGGCCGGTTAAGGGGGAGGATGGGAAGGAGGTTTCTATGGTGAGGTGGGCCCGCAGATTGGTGGATGTGGGTCGGGGCAATGAGGTTTTGGACCCGGGTTTGGGTGATGTTGAGGTCGGGTTTTTTATGGATGTGGCGTGTAGGTGCACGGATGATGATGGGAGAAGGAGACCAGGTATGAGGGAGGTGGTTTCGATGTTGGAAGCGGAGGCCAGTGTGAGATGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3330573.1	7.3e-98	leucine-rich repeat receptor protein kinase EXS
Swissprot	Q9ZWC8.1	2.2e-70	BRASSINOSTEROID INSENSITIVE 1-like protein 1
trEMBL	A0A833QZ52	5.3e-98	Leucine-rich repeat receptor protein kinase EXS

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G42440.1	48.03	9e-86	313		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g62878	AT5G42440.1	356	163	8	7	348	6	353	48.03	9e-86	313
g62878	AT1G55610.2	364	186	9	9	348	778	1135	40.66	7e-72	267
g62878	AT1G55610.1	364	186	9	9	348	778	1135	40.66	7e-72	267

Ortholog group

Species	Genes
Allium cepa	g62878.t1
Allium fistulosum	AfisC6G02022
Allium sativum	Asa8G04612.1
Arabidopsis thaliana	AT5G42440.1
Oryza sativa	LOC_Os11g06780.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	80	345	155.6	1.3e-45

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001653	F	peptide receptor activity
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0007165	P	signal transduction
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009507	C	chloroplast
GO:0009536	C	plastid
GO:0009987	P	cellular process
GO:0023052	P	signaling
GO:0038023	F	signaling receptor activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071944	C	cell periphery

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network