result

Gene information

Detail information of g65049

Location

Gene	Chr	Start	End	Strand
g65049	Scaffold_33350:HRSCAF_317182	1	3020	+

Sequences

CDS

>g65049.t1
AATGATTTGCGTGAAAGATCAGGCATTCAAGACGCGTCGTTGCTTTCGTTAGAAGGCCGTATCATGGCTGTTTCTAGTGGCGACCCTAATAGTTTTCTACCTGAATTACCTAGTATTCCGCAACTGCGCCAAGCCCGATATCGCATCTACGGCAAAATCGAGCCTATCATTGGTAAAGGGTTATACATGCGCGTGCTGGCGCCAGTTAATCCCCAAGATTTGGCTGGCGAAACCCTTATCTTGCAATTATTACAGCCGGTGCCAAAATCGCTATCCAATACCGCAGAAGCGGTGCAAGACGTTTACCGCGACTATCAAGAGCTGTCTTATAGCCGCGATTCCTTAAAAGATATTTTTAAATTAACGCTCACTTTGGTGTTAATGCTGGCGATGTTATCAGCGTTGGCGATTGCATTTGTGATTAGCCGCAGATTATCACAGCCCATCACGGTGTTGGCTGCAGGCACGCGAGCGATTGCTGCGGGCGACTACAGCACCATGCTACCAGAGCATGGCAAAGATGAATTGGGCGTGTTAGTTAAATCTTTTAATAGTATGACGCGGCAACTCGATGACGCTACCAAGGCCATGGACCGCAATCGGGCGCGCCTAGAATCTGCCAGAGGCTATTTAGAAACCATCTTGGCGCACTTGTCATCAGGCGTATTGGCGATTAACCCGCAAGGCCGTTTACGCACCCATAACTTGGTTGCCAGCAATATTTTAGGCTTAAGTCTTGCCGATTATGAAAATAAGCCCTTGGCTAATATGCTCGATACACACGGTTATTTGGCAGAGTTTGTAAAGTTGTTAGAGCATTATTTTCATCAAAACATGGCACAGGTACATTCTGAACTGAGCCAGCAACTCGAGATTATTAGCCCAGAGGGCAATAAATTGCTGTTGGTACGTGCAACGCGTCTGCCCACAGCCGCAGAGGGCGGTTTTGTGGTGGTGTTTGATGATATCACCACCATGGCACAAGCCCAGCGCGATGCGGCGTGGGGCGAGGTGGCGCGGCGATTGGCGCACGAAATCAAGAATCCGCTAACGCCGATTCAGTTATCAGCTGAGCGCTTAACGCACAAACTCACCGATAAATTGAATACAGAAGACGCCGCCATGTTAAAGCGTGCAACTGATACTATTGTTAACCAAGTGGGCGCCATGAAAACCATGGTTAACGAATTCAGCGAGTACGCGCGTGCGCCTTCTGCTACGTTGGTGCCGATTAATCTTAATAAACTTATCAAAGACGTTTCTGGTTTATACGACAGTGCGCGCGCTAAAATCCACTTTGACTTAACGCCTGAAATGCCCGATATTTTGGGTGACAAAACCATGTTACGTCAAATATTGCATAATTTGATGCAAAATGCGCAAGATGCATTGCTTGACGTACAGCAACCTGAAATCACCGTGAAAACCTTAGCGGATGCGCATGCGGTCAGGTTAATTGTAAAAGATAACGGCGCGGGTTTCCCCGATGATTTATTGCTACGCGCATGCGATCCGTACGTGACTTCAAAAGTACATGGAACTGGGTTAGGATTAGCCATTGTGAAAAAGATGGTAGAAGAACACGGCGGACAAATTAAAATTGAAAATAACCAGGATGGTGGCGCTTGCATCGGCATTACCTTGCCGCTTGCGTTAAAAGTTAAAGGGCAACATAACATGGCATCACGGAATATATTAGTAGTAGATGATGAAATTGGCATACGCGAATTGCTCAGTGATATTTTGCAAGATGAAGGGCACCGCGTCACCTTGGCAGAAAACGCACAGGCAGCGCGCGGAGCGCGTACAGAAAAACGTCCAGATCTGGTGTTGCTAGATATCTGGATGCCAGATTGCGATGGCATCAGCCTATTGAAAGAGTGGGGAAACGCAGGCTTACTAACGATGCCCGTGGTGATGATGTCAGGGCATGGCACGATCGATACAGCCGTTGAGGCGACCCGTATCGGCGCATTTGATTTTCTAGAAAAACCAATCGCTTTACAAAAATTACTCAAAACCGTCAGCGCTGCCCTCAAGCATGGCGAGCATTTGCCTAAAACCGAGATGAATCTGGCTAGCTTTGGCAAAAGCTTGGTGGTGAATGAGCTTAAATTACGCTTAGAACAAATCGCGCGTAGCAAAGCGCCCTTGCTATTAATCGGTAAAAAAGGCGGTAGCGTTGAGCTTTGTGCCCGTTTTTTGCATGTGCCAGACACGCCATGGCTTAGTTTGCATGAGTATCACAAACTCGCGAGCGCACCTTTGGATATTTTAGAGCACAACCGCGATGGTGTGGTTTTTATTGAGGAAGTGACAGCGTTGAGTAAAACAGAGCAAAAAGGGCTCTTGTTATTGTTGTCAAAGGCCGAAAAATTTGCCGTCAGGGTAGTTTGTGCCACCAGTTGCAGCATGTTGCAGTTGGCTGAAAACCCACAGTTCGATGCCGCCCTCTTGCACACATTATCGAGTAGTCATCTCAAAATCCCCAGCTTGAATGAGCACCGGGAAGATATCCCTGATCTGGTCGGCTCGATGTCTACTTTATTAACAGAGCGCGCAGGCCTGCAATATAAGAGCTTTGATATTGCTGCCTTAAATGGCTTACGCAATGCCGAGTGGCCAGGTGACTTAAAACAACTGGAAGCCGTCGTGCAAAATTTAATGCTCACGAGTCTTGGCGATAAAGTCATGCTAGAAGATGTGAGTCGTGTGCTGGAGCAATTTGTCGATACGCCGGATCACCAAGATGCCTTAAATCATGCACTGCCGATTGATTTACTACAGCCTTTGCGCGAAGCGCGCGATGAGTCTAGAGCGTACGCATCTATATCGCAAATTAAAGCAACTGGGCATTAA

Protein

Gene

>g65049.t1
AATGATTTGCGTGAAAGATCAGGCATTCAAGACGCGTCGTTGCTTTCGTTAGAAGGCCGTATCATGGCTGTTTCTAGTGGCGACCCTAATAGTTTTCTACCTGAATTACCTAGTATTCCGCAACTGCGCCAAGCCCGATATCGCATCTACGGCAAAATCGAGCCTATCATTGGTAAAGGGTTATACATGCGCGTGCTGGCGCCAGTTAATCCCCAAGATTTGGCTGGCGAAACCCTTATCTTGCAATTATTACAGCCGGTGCCAAAATCGCTATCCAATACCGCAGAAGCGGTGCAAGACGTTTACCGCGACTATCAAGAGCTGTCTTATAGCCGCGATTCCTTAAAAGATATTTTTAAATTAACGCTCACTTTGGTGTTAATGCTGGCGATGTTATCAGCGTTGGCGATTGCATTTGTGATTAGCCGCAGATTATCACAGCCCATCACGGTGTTGGCTGCAGGCACGCGAGCGATTGCTGCGGGCGACTACAGCACCATGCTACCAGAGCATGGCAAAGATGAATTGGGCGTGTTAGTTAAATCTTTTAATAGTATGACGCGGCAACTCGATGACGCTACCAAGGCCATGGACCGCAATCGGGCGCGCCTAGAATCTGCCAGAGGCTATTTAGAAACCATCTTGGCGCACTTGTCATCAGGCGTATTGGCGATTAACCCGCAAGGCCGTTTACGCACCCATAACTTGGTTGCCAGCAATATTTTAGGCTTAAGTCTTGCCGATTATGAAAATAAGCCCTTGGCTAATATGCTCGATACACACGGTTATTTGGCAGAGTTTGTAAAGTTGTTAGAGCATTATTTTCATCAAAACATGGCACAGGTACATTCTGAACTGAGCCAGCAACTCGAGATTATTAGCCCAGAGGGCAATAAATTGCTGTTGGTACGTGCAACGCGTCTGCCCACAGCCGCAGAGGGCGGTTTTGTGGTGGTGTTTGATGATATCACCACCATGGCACAAGCCCAGCGCGATGCGGCGTGGGGCGAGGTGGCGCGGCGATTGGCGCACGAAATCAAGAATCCGCTAACGCCGATTCAGTTATCAGCTGAGCGCTTAACGCACAAACTCACCGATAAATTGAATACAGAAGACGCCGCCATGTTAAAGCGTGCAACTGATACTATTGTTAACCAAGTGGGCGCCATGAAAACCATGGTTAACGAATTCAGCGAGTACGCGCGTGCGCCTTCTGCTACGTTGGTGCCGATTAATCTTAATAAACTTATCAAAGACGTTTCTGGTTTATACGACAGTGCGCGCGCTAAAATCCACTTTGACTTAACGCCTGAAATGCCCGATATTTTGGGTGACAAAACCATGTTACGTCAAATATTGCATAATTTGATGCAAAATGCGCAAGATGCATTGCTTGACGTACAGCAACCTGAAATCACCGTGAAAACCTTAGCGGATGCGCATGCGGTCAGGTTAATTGTAAAAGATAACGGCGCGGGTTTCCCCGATGATTTATTGCTACGCGCATGCGATCCGTACGTGACTTCAAAAGTACATGGAACTGGGTTAGGATTAGCCATTGTGAAAAAGATGGTAGAAGAACACGGCGGACAAATTAAAATTGAAAATAACCAGGATGGTGGCGCTTGCATCGGCATTACCTTGCCGCTTGCGTTAAAAGTGCAAAAATCTGCCATCGTGCCATAATGTACAATAAGATAGGCAACTGTAATCAGCGATGAGCTTGTGCCGTCGCAAACCAGGTAGGTTAAAGGGCAACATAACATGGCATCACGGAATATATTAGTAGTAGATGATGAAATTGGCATACGCGAATTGCTCAGTGATATTTTGCAAGATGAAGGGCACCGCGTCACCTTGGCAGAAAACGCACAGGCAGCGCGCGGAGCGCGTACAGAAAAACGTCCAGATCTGGTGTTGCTAGATATCTGGATGCCAGATTGCGATGGCATCAGCCTATTGAAAGAGTGGGGAAACGCAGGCTTACTAACGATGCCCGTGGTGATGATGTCAGGGCATGGCACGATCGATACAGCCGTTGAGGCGACCCGTATCGGCGCATTTGATTTTCTAGAAAAACCAATCGCTTTACAAAAATTACTCAAAACCGTCAGCGCTGCCCTCAAGCATGGCGAGCATTTGCCTAAAACCGAGATGAATCTGGCTAGCTTTGGCAAAAGCTTGGTGGTGAATGAGCTTAAATTACGCTTAGAACAAATCGCGCGTAGCAAAGCGCCCTTGCTATTAATCGGTAAAAAAGGCGGTAGCGTTGAGCTTTGTGCCCGTTTTTTGCATGTGCCAGACACGCCATGGCTTAGTTTGCATGAGTATCACAAACTCGCGAGCGCACCTTTGGATATTTTAGAGCACAACCGCGATGGTGTGGTTTTTATTGAGGAAGTGACAGCGTTGAGTAAAACAGAGCAAAAAGGGCTCTTGTTATTGTTGTCAAAGGCCGAAAAATTTGCCGTCAGGGTAGTTTGTGCCACCAGTTGCAGCATGTTGCAGTTGGCTGAAAACCCACAGTTCGATGCCGCCCTCTTGCACACATTATCGAGTAGTCATCTCAAAATCCCCAGCTTGAATGAGCACCGGGAAGATATCCCTGATCTGGTCGGCTCGATGTCTACTTTATTAACAGAGCGCGCAGGCCTGCAATATAAGAGCTTTGATATTGCTGCCTTAAATGGCTTACGCAATGCCGAGTGGCCAGGTGACTTAAAACAACTGGAAGCCGTCGTGCAAAATTTAATGCTCACGAGTCTTGGCGATAAAGTCATGCTAGAAGATGTGAGTCGTGTGCTGGAGCAATTTGTCGATACGCCGGATCACCAAGATGCCTTAAATCATGCACTGCCGATTGATTTACTACAGCCTTTGCGCGAAGCGCGCGATGAGTTTGAGCGCTATTATTTTAAACACCACATGAAATCGGTCAGTAGCAATATGAGTAAACTCGCAGAAATTTCAGGTCTAGAGCGTACGCATCTATATCGCAAATTAAAGCAACTGGGCATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	WP_020167031.1	5.9e-211	MULTISPECIES: HAMP domain-containing protein
Swissprot	P45675.2	1.3e-56	Nitrogen regulation protein NtrY homolog
trEMBL	A0A2S5QYX1	8.1e-210	histidine kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66340.1	23.83	2e-09	62.4	AtETR1;EIN1;ETR;ETR1	Signal transduction histidine kinase, hybrid-type, ethylene sensor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g65049	AT1G66340.1	407	246	16	329	680	333	730	23.83	2e-09	62.4
g65049	AT4G31920.1	110	66	3	565	671	19	125	34.55	3e-08	58.2
g65049	AT2G01760.1	111	62	3	565	671	13	120	37.84	3e-08	57.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00672.22	HAMP	Family	125	191	56.0	3.3e-15
PF12860.4	PAS_7	Domain	215	330	31.3	1.7e-07
PF00512.22	HisKA	Domain	335	403	30.4	2.7e-07
PF02518.23	HATPase_c	Domain	444	551	64.9	7.9e-18
PF00072.21	Response_reg	Domain	565	675	92.8	1.3e-26
PF14532.3	Sigma54_activ_2	Domain	695	832	130.7	3.6e-38

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network