result

Gene information

Detail information of g65198

Location

Gene	Chr	Start	End	Strand
g65198	Scaffold_33375:HRSCAF_317720	449422	453300	+

Sequences

CDS

>g65198.t1
ATGGAAAATGGCTTTGGATTTAGATTTTCAAACAACTTCATCACTGATGCTTCTAATACCAGGAACAGCGCTCCATTAGGATTTGAATACGAAGAACCAAATATTTCCTTAGGCCTGAATTCCAATAGAACATCCAATCTGTTTAGTTCTAGCTCAATTGGATCAAAGAGAAAGCTAGATCATATGCATGGAAATGATTTGTTATCTCTAGGGTTAGGACTCCAGTTAAGTTCAGCAAAGGAATTTACGACCAAAGAAAGTTGCATAGACTTGGGGTTGGATTTTCAGCTTCATCTTGGCAATAACGAGAATTCATTCACTCCAAAAATACTAAAAACAAACCCAGTTCCGGACCTCAATTTAAGTCTCTCAATCTGTCCATCCGAGTCTATTATAACCAACAATATCACTAGTCCTCCTGCTACATCACCAATCACTAGTCGTACCGAACCTTCAATAACAGAAACATCTGTTGAAAAATCAACCATCACTGGAACAACAACTGCTACTGGCCTTCCACGCAACCCCAGCACCAAAACCTGTGTATTTCAAGGATGCACAAAAGGAGCAAGAGGGGCATCGCGCCTCTGCATAGCACATGGAGGCGGCAGACGATGCCAGAAACAAGGCTGCAACAAAGGAGCGGAAGGTCGAACCGTCTTTTGCAAAGCTCACGGCGGTGGTCGTCGCTGTCAGTTTCTCGGGTGCACCAAAAGCGCGGAAGGTCGCACAGATCACTGCATCGCTCACGGTGGGGGCCGGCGCTGCTCCCACCCAGACTGCGCACGCGCGTCGCGTGGAAAGTCCGGACTGTGCATCAAGCATGGTGGGGGCAAACGGTGCCGGATGGAGAACTGCACTAGAAGCGCGGAAGGGTATTCCGGTCTTTGCATCTCCCATGGTGGAGGGCGCCGCTGCCAGTTTCCAGAATGTCAAAAGGGTGCGCAAGGAAGCACGATGTACTGTAAAGCGCATGGAGGAGGCAAAAGATGCATTGCGTTGGGATGCACAAAAGGAGCAGAGGGTAGCACACCCTTCTGCAAAGGGCATGGGGGCGGTAAGAGATGTGCCTATGAAGGGGAAGGGGAGAAGTGCCCTAAAAGCGTGCATGGAGGGACGATGTTCTGTGTTGCGCATGGAGGTGGAAAGAGGTGTGCTGTAAAGGAGTGCACGAAGAGTGCTAGAGGGCGCACGGATTACTGTGTGAGGCACGGAGGTGGGAAGAGGTGTAAGTTTGAAGGTTGTGGAAAGAGTGCGCAGGGTCGGACTGATTTTTGTAAGGCACATGGTGGGGGTAAGAGGTGTTCTTGGGGCAGTGAAGGTGGTGCTTGTGATAGGCTTGCTAGAGGTAGTACAGGCATGTGTGGTGTACATAGCAGTTTGGTTCAGGATGTTCGTGTGCATGGTGGCAATGTTATTACTGCTGACAAGATGAAAGTTGCCGATTCTATGTCCATTCCAGAAGGAAGAGTTCATGGTGGAAGTTTCTTGACTTTTTTATCCAACAATCCAAATGCTGAAAGTTTTATGTATGGATTGAATTTATGTCAGTATAGTCTGGTTTGTCGCTGTATATTCGTACTAAGTGGAAACCCTGCTGTGAAAAATATCATCACTCGTTTCTCTCCTAATTCTTCACTACTACATCAAATAAACATGAACAACAACCACTATCCATCTCCTTCTCCTTCTCCATCTCAATACTTCATCACCCATCATAAAAAATCACCAATAGCTTTGATTACAATCATCCCCATCGCCTCACTATCTCTTTTCGCACTTCTCCTTATCCTCTTCTTATCAATCCTATACAACAAAAGGAGGCATCATCATGCATTAATCGACCCATACGAAAACACATTAAACATAACATCTATTCATCATGCTCATTCTCATCCTTTAGCCGACATAGATGCTATAACCGATGGCTTCCATCCATCTAACATCATTGGTAAAGGTCCAACAAGTACTGTATACAAAGCAACTTGTATCACCGGGGAACTTGTAGCGGTCAAAAGGATTCATTCTTACATTATTTTGAGCAATATTGGAGTGCTAGATTTCTCTTCTAAGCTCAAGTCTTTGTCGTTCATAAATCATCCTAATGTAGCTTCTATAGTTGGGTATTCCGAAGCGCCAGGAGAAAGGATTATAGTTTGCGAATACGTGGGAAGGAGTTTGGAGTCTTGGTTGCATGATCATGAAGATGCAAAGAATTTGAGTTGGGGAATTCGGTTGAAGATTGCCGCATGTGTTGCACGAGGAATTGAGCATTTGCATGAAGCAATCTCTCCTGGCATGGTGCATGGAAGAGTGAAGCCAAGCAACATTCTGATTGATAGAAACTTCAGTGCTAAAGTTTGCGACTACAATTTACTGTTCATAGACCGAAGCAATTACAAAAGAAGCTTCGGTGGGTACATGGACAATGAAGGAAAAGAAGAAGAGAGCAAGGAGAACGATGTCTACGGAGTAGGAGTGGTTTTGTTGGAAATTTTAAGCGGGAGAGAAAGCGAGGGAGGGATGATAGTTGAATGGGCATTGCCACTGATTAGAATGGGCAGAGTGGATGAAATGTTGGATACAAGGTTGAATTTTCCAAAGGATGAAATTATGAGGAATTTGGTTAGAATGGCAAGAGTTGCTTTGGCTTGCGTTGGAAATGGAAGGAAAAGCAGACCTTCCATTGTTCAGGTTTCTGCAATTTTAAGTAGCTTGGGCAGATGA

Protein

Gene

>g65198.t1
ATGGAAAATGGCTTTGGATTTAGATTTTCAAACAACTTCATCACTGATGCTTCTAATACCAGGAACAGCGCTCCATTAGGATTTGAATACGAAGAACCAAATATTTCCTTAGGCCTGAATTCCAATAGAACATCCAATCTGTTTAGTTCTAGCTCAATTGGATCAAAGAGAAAGCTAGATCATATGCATGGAAATGATTTGTTATCTCTAGGGTTAGGACTCCAGTTAAGTTCAGCAAAGGAATTTACGACCAAAGAAAGTTGCATAGACTTGGGGTTGGATTTTCAGCTTCATCTTGGCAATAACGAGAATTCATTCACTCCAAAAATACTAAAAACAAACCCAGTTCCGGACCTCAATTTAAGTCTCTCAATCTGTCCATCCGAGTCTATTATAACCAACAATATCACTAGTCCTCCTGCTACATCACCAATCACTAGTCGTACCGAACCTTCAATAACAGAAACATCTGTTGAAAAATCAACCATCACTGGAACAACAACTGCTACTGGCCTTCCACGCAACCCCAGCACCAAAACCTGTGTATTTCAAGGATGCACAAAAGGAGCAAGAGGGGCATCGCGCCTCTGCATAGCACATGGAGGCGGCAGACGATGCCAGAAACAAGGCTGCAACAAAGGAGCGGAAGGTCGAACCGTCTTTTGCAAAGCTCACGGCGGTGGTCGTCGCTGTCAGTTTCTCGGGTGCACCAAAAGCGCGGAAGGTCGCACAGATCACTGCATCGCTCACGGTGGGGGCCGGCGCTGCTCCCACCCAGACTGCGCACGCGCGTCGCGTGGAAAGTCCGGACTGTGCATCAAGCATGGTGGGGGCAAACGGTGCCGGATGGAGAACTGCACTAGAAGCGCGGAAGGGTATTCCGGTCTTTGCATCTCCCATGGTGGAGGGCGCCGCTGCCAGTTTCCAGAATGTCAAAAGGGTGCGCAAGGAAGCACGATGTACTGTAAAGCGCATGGAGGAGGCAAAAGATGCATTGCGTTGGGATGCACAAAAGGAGCAGAGGGTAGCACACCCTTCTGCAAAGGGCATGGGGGCGGTAAGAGATGTGCCTATGAAGGGGAAGGGGAGAAGTGCCCTAAAAGCGTGCATGGAGGGACGATGTTCTGTGTTGCGCATGGAGGTGGAAAGAGGTGTGCTGTAAAGGAGTGCACGAAGAGTGCTAGAGGGCGCACGGATTACTGTGTGAGGCACGGAGGTGGGAAGAGGTGTAAGTTTGAAGGTTGTGGAAAGAGTGCGCAGGGTCGGACTGATTTTTGTAAGGCACATGGTGGGGGTAAGAGGTGTTCTTGGGGCAGTGAAGGTGGTGCTTGTGATAGGCTTGCTAGAGGTAGTACAGGCATGTGTGGTGTACATAGCAGTTTGGTTCAGGATGTTCGTGTGCATGGTGGCAATGTTATTACTGCTGACAAGATGAAAGTTGCCGATTCTATGTCCATTCCAGAAGGAAGAGTTCATGGTGGAAGTTTCTTGACTTTTTTATCCAACAATCCAAATGCTGAAAGTTTTATGTATGGTGGAACGAAATGATGTATGTAGAAACATATCTATTGTGTTTGTACTTTGTAGGATTGAATTTATGTCAGTATAGTCTGGTTTGTCGCTGTATATTCGTACTAAGTGGAAACCCTGCTGTGAAAGTAATGGAATAATGGGGATAAGCGTTGGGTATATTTAGAGTTATGTTGATGTAGGAATATGGTCTAGCAATTTGTTCATATTTTGAATAAACTTTGCTACTGTATGAACTTTTTTTTTTAATCTTAGTTGAAATGTTTGCATTTGGATTTTTGTGATCTATACCGCTTTTTGTATATTAACATTTTAGTTGCATCAGTGTCATGCCTTAGTTGTATCTGTGTGATTTTTTTTTTTTTTTTGGGTACTATGATAAACAATAATGTTCATACTTATGGAAATCATTAAGTAATGCTGGAGGATTCTTAAAGTTTATCATCAATGGATTGATAATGTTATCACTATTTTTGCACTGTTTAAAATACCGTTTCATCATCTTGGAAAACCATTTAATCTAGAAGGGTTTCAGAGAAGTTTTTAACTGGCGTGATATTCAAAGAATAAATGATAGTAATAACTTTCGGTTTGGGATTACATATATCTGAGTTTATGTTCCTAGCCCATGTGATTTGGGTTAAAATTTTTGAACATCGGTATAGTTGGCAAACAAAACTATTATTTTGTGGATGGTACCGTAATACTTCAGATTTTTTTTATTTCTCTATGACGAGATTATACAGATGACGTATTATCGGCATAATGGGAAAAGTAAAGCCTTTCTTTTAGGTTTCTGAGTTGCTGATTAAAGGGATATCTACAAATTAGCCCGAGTTAGTTTGATGGATACACCCAATCTAACAAAATAAACCAAGACAAAAAAACCTCAGTCATGTTTACCAAAAACTCAACTAACCACATCCTATCTATTTAGTTATACTATTTTCCCACGTCAATTCCATAATAGCTACCTACCTACTTATTTTACTCGTATTAACAAACTCATAAGCAACAACTAATCAAAATCAACACACAAATGTAGAATATCATCACTCGTTTCTCTCCTAATTCTTCACTACTACATCAAATAAACATGAACAACAACCACTATCCATCTCCTTCTCCTTCTCCATCTCAATACTTCATCACCCATCATAAAAAATCACCAATAGCTTTGATTACAATCATCCCCATCGCCTCACTATCTCTTTTCGCACTTCTCCTTATCCTCTTCTTATCAATCCTATACAACAAAAGGAGGCATCATCATGCATTAATCGACCCATACGAAAACACATTAAACATAACATCTATTCATCATGCTCATTCTCATCCTTTAGCCGACATAGATGCTATAACCGATGGCTTCCATCCATCTAACATCATTGGTAAAGGTCCAACAAGTACTGTATACAAAGCAACTTGTATCACCGGGGAACTTGTAGCGGTCAAAAGGATTCATTCTTACATTATTTTGAGCAATATTGGAGTGCTAGATTTCTCTTCTAAGCTCAAGTCTTTGTCGTTCATAAATCATCCTAATGTAGCTTCTATAGTTGGGTATTCCGAAGCGCCAGGAGAAAGGATTATAGTTTGCGAATACGTGGGAAGGAGTTTGGAGTCTTGGTTGCATGATCATGAAGATGCAAAGAATTTGAGTTGGGGAATTCGGTTGAAGATTGCCGCATGTGTTGCACGAGGAATTGAGCATTTGCATGAAGCAATCTCTCCTGGTATCATAAATTATCCTTTTCTGCATCGTCTTACTTTTATTTTAACATATACACCAGATATACTTACAGGTCCCTTTAACAATGGACAACCCTATGGAGTTAACATCATGTTGTAACTGTTCACTTTCTTGTGTGCATAAGTAGTGTGACTTTTCATGAATCATTTGATATGTGAATTATAGGCATGGTGCATGGAAGAGTGAAGCCAAGCAACATTCTGATTGATAGAAACTTCAGTGCTAAAGTTTGCGACTACAATTTACTGTTCATAGACCGAAGCAATTACAAAAGAAGCTTCGGTGGGTACATGGACAATGAAGGAAAAGAAGAAGAGAGCAAGGAGAACGATGTCTACGGAGTAGGAGTGGTTTTGTTGGAAATTTTAAGCGGGAGAGAAAGCGAGGGAGGGATGATAGTTGAATGGGCATTGCCACTGATTAGAATGGGCAGAGTGGATGAAATGTTGGATACAAGGTTGAATTTTCCAAAGGATGAAATTATGAGGAATTTGGTTAGAATGGCAAGAGTTGCTTTGGCTTGCGTTGGAAATGGAAGGAAAAGCAGACCTTCCATTGTTCAGGTTTCTGCAATTTTAAGTAGCTTGGGCAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008798337.1	4.6e-88	serine/threonine-protein kinase-like protein CR4
Swissprot	Q9LX29.1	2.8e-37	Protein CRINKLY 4
trEMBL	A0A8B7CG07	1.7e-87	serine/threonine-protein kinase-like protein CR4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G64140.1	49.36	2e-142	503

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g65198	AT1G64140.1	628	181	15	8	500	4	629	49.36	2e-142	503
g65198	AT5G64550.1	333	98	4	133	464	173	498	68.17	3e-125	446
g65198	AT5G09670.1	291	77	4	174	462	149	436	71.82	5e-116	416

Ortholog group

Species	Genes
Allium cepa	g65198.t1
Allium fistulosum	AfisC6G04435
Allium sativum	Asa8G02699.1
Arabidopsis thaliana	AT5G46080.1
Oryza sativa	LOC_Os08g28890.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	645	837	74.7	6.7e-21

Gene Ontology

Accession	Ontology	Name
GO:0005575	C	cellular_component
GO:0005911	C	cell-cell junction
GO:0009506	C	plasmodesma
GO:0030054	C	cell junction
GO:0055044	C	symplast

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04730	IRAK1; interleukin-1 receptor-associated kinase 1	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			Neurotrophin signaling pathway	ko04722
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network