| Gene | Chr | Start | End | Strand |
|---|---|---|---|---|
| g65756 | Scaffold_33446:HRSCAF_319374 | 9097 | 12674 | - |
| CDS |
| Protein |
| Gene |
| Database | accession number | e-value | annotation |
|---|---|---|---|
| nr | CDW60636.1 | 0.0e+00 | RNA polymerase-associated protein rapA |
| Swissprot | B1IRB9.1 | 0.0e+00 | RNA polymerase-associated protein RapA |
| trEMBL | A0A077ZJZ2 | 0.0e+00 | RNA polymerase-associated protein rapA |
| TAIR id | % identity | e-value | bit score | gene aliases | Short description |
|---|---|---|---|---|---|
| AT1G76050.2 | 30.98 | 2e-16 | 85.9 | Pseudouridine synthase family protein |
| Species | Genes |
|---|---|
| - | - |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|---|---|---|---|---|---|
| PF00176.20 | SNF2_N | Family | 174 | 441 | 66.8 | 1.3e-18 |
| PF00271.28 | Helicase_C | Family | 493 | 601 | 58.9 | 5e-16 |
| PF12137.5 | RapA_C | Domain | 605 | 964 | 526.4 | 3e-158 |
| PF00849.19 | PseudoU_synth_2 | Family | 967 | 1114 | 99.7 | 1.6e-28 |
| Accession | Ontology | Name |
|---|---|---|
| GO:0000166 | F | nucleotide binding |
| GO:0005515 | F | protein binding |
| GO:0005622 | C | intracellular |
| GO:0005575 | C | cellular_component |
| GO:0001000 | F | bacterial-type RNA polymerase core enzyme binding |
| GO:0008152 | P | metabolic process |
| GO:0003674 | F | molecular_function |
| GO:0003676 | F | nucleic acid binding |
| GO:0003824 | F | catalytic activity |
| GO:0017111 | F | nucleoside-triphosphatase activity |
| GO:0004386 | F | helicase activity |
| GO:0005488 | F | binding |
| GO:0005524 | F | ATP binding |
| GO:0005623 | C | cell |
| GO:0005737 | C | cytoplasm |
| GO:0006139 | P | nucleobase-containing compound metabolic process |
| GO:0016887 | F | ATPase activity |
| GO:0006351 | P | transcription, DNA-templated |
| GO:0006355 | P | regulation of transcription, DNA-templated |
| GO:0006725 | P | cellular aromatic compound metabolic process |
| GO:0006807 | P | nitrogen compound metabolic process |
| GO:0008144 | F | drug binding |
| GO:0008150 | P | biological_process |
| GO:0009058 | P | biosynthetic process |
| GO:0009059 | P | macromolecule biosynthetic process |
| GO:0009889 | P | regulation of biosynthetic process |
| GO:0009891 | P | positive regulation of biosynthetic process |
| GO:0009893 | P | positive regulation of metabolic process |
| GO:0009987 | P | cellular process |
| GO:0010467 | P | gene expression |
| GO:0010468 | P | regulation of gene expression |
| GO:0010556 | P | regulation of macromolecule biosynthetic process |
| GO:0010557 | P | positive regulation of macromolecule biosynthetic process |
| GO:0010604 | P | positive regulation of macromolecule metabolic process |
| GO:0010628 | P | positive regulation of gene expression |
| GO:0016070 | P | RNA metabolic process |
| GO:0045935 | P | positive regulation of nucleobase-containing compound metabolic process |
| GO:0016462 | F | pyrophosphatase activity |
| GO:0045893 | P | positive regulation of transcription, DNA-templated |
| GO:0016787 | F | hydrolase activity |
| GO:0016817 | F | hydrolase activity, acting on acid anhydrides |
| GO:0016818 | F | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
| GO:0017076 | F | purine nucleotide binding |
| GO:0019899 | F | enzyme binding |
| GO:0018130 | P | heterocycle biosynthetic process |
| GO:0019219 | P | regulation of nucleobase-containing compound metabolic process |
| GO:0019222 | P | regulation of metabolic process |
| GO:0019438 | P | aromatic compound biosynthetic process |
| GO:0030554 | F | adenyl nucleotide binding |
| GO:0031323 | P | regulation of cellular metabolic process |
| GO:0031325 | P | positive regulation of cellular metabolic process |
| GO:0031326 | P | regulation of cellular biosynthetic process |
| GO:0031328 | P | positive regulation of cellular biosynthetic process |
| GO:0032553 | F | ribonucleotide binding |
| GO:0032555 | F | purine ribonucleotide binding |
| GO:0032559 | F | adenyl ribonucleotide binding |
| GO:0032774 | P | RNA biosynthetic process |
| GO:0034641 | P | cellular nitrogen compound metabolic process |
| GO:0034645 | P | cellular macromolecule biosynthetic process |
| GO:0034654 | P | nucleobase-containing compound biosynthetic process |
| GO:0035639 | F | purine ribonucleoside triphosphate binding |
| GO:0036094 | F | small molecule binding |
| GO:0043167 | F | ion binding |
| GO:0043168 | F | anion binding |
| GO:0043170 | P | macromolecule metabolic process |
| GO:0043175 | F | RNA polymerase core enzyme binding |
| GO:0044237 | P | cellular metabolic process |
| GO:0044238 | P | primary metabolic process |
| GO:0044249 | P | cellular biosynthetic process |
| GO:0044260 | P | cellular macromolecule metabolic process |
| GO:0044271 | P | cellular nitrogen compound biosynthetic process |
| GO:0044424 | C | intracellular part |
| GO:0044464 | C | cell part |
| GO:0046483 | P | heterocycle metabolic process |
| GO:0048518 | P | positive regulation of biological process |
| GO:0048522 | P | positive regulation of cellular process |
| GO:0050789 | P | regulation of biological process |
| GO:0050794 | P | regulation of cellular process |
| GO:0051171 | P | regulation of nitrogen compound metabolic process |
| GO:0051173 | P | positive regulation of nitrogen compound metabolic process |
| GO:0051252 | P | regulation of RNA metabolic process |
| GO:0051254 | P | positive regulation of RNA metabolic process |
| GO:0060255 | P | regulation of macromolecule metabolic process |
| GO:0065007 | P | biological regulation |
| GO:0070063 | F | RNA polymerase binding |
| GO:0071704 | P | organic substance metabolic process |
| GO:0080090 | P | regulation of primary metabolic process |
| GO:0090304 | P | nucleic acid metabolic process |
| GO:0097159 | F | organic cyclic compound binding |
| GO:0097367 | F | carbohydrate derivative binding |
| GO:0097659 | P | nucleic acid-templated transcription |
| GO:1901265 | F | nucleoside phosphate binding |
| GO:1901360 | P | organic cyclic compound metabolic process |
| GO:1901362 | P | organic cyclic compound biosynthetic process |
| GO:1901363 | F | heterocyclic compound binding |
| GO:1901576 | P | organic substance biosynthetic process |
| GO:1902680 | P | positive regulation of RNA biosynthetic process |
| GO:1903506 | P | regulation of nucleic acid-templated transcription |
| GO:1903508 | P | positive regulation of nucleic acid-templated transcription |
| GO:2000112 | P | regulation of cellular macromolecule biosynthetic process |
| GO:2001141 | P | regulation of RNA biosynthetic process |
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K03580 | hepA; ATP-dependent helicase HepA | EC:3.6.4.- | - | - |