Detail information of g68999


Location
GeneChrStartEndStrand
g68999Scaffold_33898:HRSCAF_329885135503158890-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010904647.16.5e-24protein LOL3 isoform X1
SwissprotQ2QMB3.12.6e-14Putative zinc finger LOL2
trEMBLA0A6I9Q8F24.7e-24protein LOL3 isoform X1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT4G20380.259.785e-49 190LSD1LSD1 zinc finger family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag257463.t1; g27384.t1; g505636.t1; g520547.t1; g68999.t1
Allium fistulosumAfisC1G03106; AfisC1G03653; AfisC1G04191; AfisC1G06782; AfisC3G01178; AfisC3G03766; AfisC4G02342; AfisC4G05349; AfisC5G01983; AfisC6G00323; AfisC6G05402
Allium sativumAsa0G01868.1; Asa0G02071.1; Asa0G02674.1; Asa2G04002.1; Asa3G00397.1; Asa4G00042.1; Asa4G01812.1; Asa4G01819.1; Asa7G01857.1; Asa7G05663.1; Asa8G01788.1
Arabidopsis thalianaAT1G32540.2; AT1G32540.3; AT4G20380.1; AT4G20380.2; AT4G20380.3; AT4G20380.4; AT4G20380.5; AT4G20380.6; AT4G20380.7; AT4G20380.8
Oryza sativaLOC_Os03g43840.1; LOC_Os08g06280.1; LOC_Os08g06280.2; LOC_Os08g06280.3; LOC_Os08g06280.4; LOC_Os08g06280.7; LOC_Os08g06280.8; LOC_Os08g06280.9; LOC_Os12g41700.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF06943.9zf-LSD1Domain315441.39.1e-11
PF06943.9zf-LSD1Domain709344.21.1e-11
PF06943.9zf-LSD1Domain10813249.22.9e-13

Gene Ontology
AccessionOntologyName
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KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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