result

Gene information

Detail information of g69218

Location

Gene	Chr	Start	End	Strand
g69218	Scaffold_33927:HRSCAF_330247	676050	678031	-

Sequences

CDS

Protein

Gene

>g69218.t1
ATGGTGTCCCAAGAGGAAACGGAAGAGGAGGAATCCAGAAGTGCGGTTAAGTTGCGATATTTAATTTAGCAATAGTCATTTGATCATTTAGTAGCAAGAATTCAGGTCTTCAAACTTCATCGCTTACTAAAACTAGGATTAAAATTCACGATAAAGCTAGAAGATCAAATTTGAATTTGACAAAAAACAATCCACAAGCATTTGAATGCAAATGACCGTATATATTACCTAACATCCTCTAAAATTTACAGTCTCTTCTTCCTCAACCAAGACTTGGGGCTGACGTCGCCTTTTAGGTTTTATCGTCAACTCTAATAAATCACCACTTAATTTCTGGATTTTTATCGGATACTGCACTTTTACATTTCGGACCTTCTAGCATAACTTAGCATGACGGTATTTGTGTTAGTTTTCAAACTGTGATTCAAAATTGATGGAGAAAAACTGGTTGGAAAAGGGTCAGTCTGAAAATTGAAATTAGTTTTAACGTATAAAATGGAGTATGATTACTTTTTCTACCATAAAGCTTTGTTTATTCCTTCCAATTTTTTCAAAGATTATAGTATTCAAACTCCTCTTCCACCTCAAATCAAATACATATTTGAAAAAGCAAAACTTTTAAGTTAAACGGAACTTTAAATTTTTAAAAAGCATTTGTCAATAGAACAACCCGTCATTCCGAACCATTCAAACCGACAATGATTCACATATCACACTTGAATTACTCGAAACAACAGATTGTTAATTTATATTTGACAGAATTTAGCATATACATTAAATAAATCAATCATAGAATCACAGACACAGAGTAGTATAACTGTAAGCAGCGGAATGGATAAATAGTAGCTCATGAAACTACAACATAAAATCAGAGTCTAAAGCTAATATAACAGAAATCTCAAATACATAGAAATCACTAATACAAAAGCAAACTGACAAGTCTGAACATAAACAACTAGAAATAACTAAAAGCTGAATAGATAAAAGATAGATCTTCAAACAAAACTTCAAGCTCCAAAGATGAATCTCAAATGCTGAGTCACTCAGTCTGACCCAAACATAAAACAAAACATAAAACACTCGAGTCAAGATTAACATTCACTACACCAAACATGCCATTTTGTCATACTTTTTTCGTTTCATTTTGTCACGGTTATTATTGTTGGAAATTTGTAACGGTTATTACTGTTACATTATATTATCACGGTTATTTCCGTGACAAATTTTGGGCTTTTCGTAAATAACTCAAAGACGTTGGATAAAGTCGTCATTTAAGTTTCAATCGTCACTTCAGTTGATTGTCACGCTTCTGCTTCTGACATTCTTCCCCCAAATCAAATTAGGTTTAAGTCGTTCTATTTCAAAGCCTCCTTCGATCCAGCGTGTCGCCCCTCTCTTTCGCCTACCGTGCCCTAACCCAAAACCCCATCCTACGCGAAACCTCCCCGGACACCATCCATCGCGTCATCTCGTTCCTCCTCTCCAAAGGCATCCACCACAAGGACCTCCCACGCATCTTCGGCATGTGCCCTAAACTCCTCACCTCCGACGTCAAGTCAGAGCTCGCACCCGTCTTCTCCTTCCTCTCCGACGAGCTCCACGTCTCCGATTCCAACGTCCGTAAGGTCATCAACAAGTGCCCTAGGCTTTTGGTCTCCAGCGTCCGCGACCAACTTCGGCCTTCGCTTATTTATTTGCGGAGGTTGGGGTTTAGCGATGTGAAGGCGCTAGCTTATCGAGATGTGATTCTTTTGGTTTCTGATGTGGAGAGCACATTGATGCCGAAGCTTGAGTTTTTGATTGGGTTGGGCATGACGAGAGATGACGCGGTGGAGATGGTTTTCAGGTGTCCGGGCTTGTTTACGTTTAGCGTGGAGAGGAATTTTAAGCCGAAGTATGAGTATTTTGTAGAGGAGATGGATGGGAATTTGGAGGAGTTGTTGCTCATGAGATTCACCAAAAGCTACACAACAATCTACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_028086214.1	6.3e-39	transcription termination factor MTEF1, chloroplastic-like
trEMBL	A0A8T3C7N4	3.5e-39	Transcription termination factor MTEF1, chloroplastic

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G34620.1	60.11	2e-60	228		Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g69218	AT2G34620.1	178	71	0	31	208	71	248	60.11	2e-60	228
g69218	AT2G03050.1	190	101	2	30	218	47	234	45.26	1e-40	162
g69218	AT3G18870.1	178	103	4	35	208	51	226	38.76	3e-26	115

Ortholog group

Species	Genes
Allium cepa	g124743.t1; g169518.t1; g201158.t1; g205183.t1; g277401.t1; g325175.t1; g38755.t1; g529407.t1; g531744.t1; g69218.t1; g92401.t1; g9460.t1
Allium fistulosum	AfisC1G04395; AfisC2G07120; AfisC5G04232; AfisC5G07017; AfisC6G06893
Allium sativum	Asa0G03179.1; Asa1G00639.1; Asa2G01696.1; Asa2G06485.1; Asa3G00403.1; Asa3G02212.1; Asa4G05530.1; Asa4G05532.1; Asa5G03415.1; Asa6G02699.1; Asa6G03304.1; Asa6G05632.1; Asa8G02987.1; Asa8G02988.1; Asa8G05099.1
Arabidopsis thaliana	AT2G34620.1
Oryza sativa	LOC_Os03g57149.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	12	161	62.8	2.3e-17
PF02536.11	mTERF	Family	144	209	46.9	1.7e-12

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network