result

Gene information

Detail information of g69494

Location

Gene	Chr	Start	End	Strand
g69494	Scaffold_33952:HRSCAF_330878	29923	31946	-

Sequences

CDS

Protein

Gene

>g69494.t1
ATGGATATTAGTTGGAATGTCTTCTTAACATACCTCAATTTCCATGGAAAATTAGAAAATGTTGTGATTTTTTGGTGTATTTTGGTGAAGTTCGATTTGGTTTGGGGATATGTTTTGGTTAGATTTTGGGATCAATTCGACGCAGCTAGAGTGCCACGGTCAATTGCTGTTGAGGAGGAGTTATTCAGGCGAGGCAAGAGTGTAAACTCTGAATTTTTTTGGGTTTCGCGAAGCTAAATTGGCCGTTGGTCAAAAGGGGCATGGTCTTCGGCAGTGGTGAATGCACTTGACTATAGGGGATGCAAGCAGTTGCGGGTGATGATTTAAGTGAAGGGTTGGTTATGTTCGAATTAGGAAAGTCGCGATTAGGGATTTCAGGTCGTGGATTTGGGTCATGGATTTTATGTTGTTCGGATTTAATACTGAGTTGTGTGTAGCAACGATTTTTTTTTATGCATAGAAAAATATACTGCACTGTCTTTAATTTCCTACTCCGCGGTGCATTACCAACACAAAATGAAGACTACACTTGAAAATCTATTGCAGATCAACGATAGATAAACCAATGGATAAATTGCAGCAAAATTTTCAATGCTGATGTTTAATTTGCTATTTTTAAATTTTAACAGGAGGGCACATAAACCCAGCAGTGACCTTCAGTCTGTTCTTAGCAAGGAAGCTATCCCTTACAAGGGCAGTCTTCTACATGATCATGCAATGCTTAGGTGCAATTTGTGGAGCTGGAGTCATAAAAGGCTACCAAAAGGGCCTCTACATGACCCAACGTGGAGGTGCTAACATTGTTTCACCTGGCTACACCAAAGGCTCTGGTTTGGGTGCCGAAATCATAGGCAATTTCGTTCTTGTTTACACCATCTTCTCCACTACCGATGCCAAGAGAAACGCGAGGGACTCCCATGTTCCCATAAGTTATCGTCTTCATTTTTGGATTTTTCAAATCAATTTAGTCCACTTTACAAAACTGATAACAAGTTTTGATCTGTCTCAAAACATATTACAGATATTATGTTTGTCCCACTATTTGTACCTTTATTTTTACCATTTGAAATATGTATAAACATAGAATATGAATTTGGCTATGATGGGATTCTTGCACCACTGCCTATTGGATTTGCAGTGTTTCTTGTCCATTTAGCGACTATTCCAATCACCGACACAGGCATTAACCCAGCTAGGAGTCTTGGTGCTATCATCATCTACAACAAAGATCATGCTTGGAATGACCATGTATGTTTATTATTTACTTTTTTTTCTTTTAATATACACAGACACATATAGAGATCAGTTATAAGGCAAAACATAATACAGTTTACATAAGAGGTTGAAATCTAATGGTTTAGACATGTTGTGTCACATATTGTATAGCCAATCCTTGCATGTGTTTGTATGAGCAAGGATCAATAGCTTTCTCTATTTAGCACAATGACCCTTTTATTTCAGCCACTAGTTTGTATTTAAGTAATGGTGTGATATAAAAAGAGTAACAATTAGTATTTAAACACAAACGAGCGGTTGAAATTAAAGAGCCGATGTTGGGGCTATGGTGATCCTTTTCCATACACACACTCATACATATAATACACACATATATAACATTGACTAATTGATTGAATATGGAATGAAAAATGCAGTGGATATTCTGGGTTGGACCATTCGTTGGAGCTGCACTTGCTTCCATGTATCACCAAATTATGATAAGAGCAATTCCATTCAAAAGCAGTTCCTAGAGTTCATTATTGTATGATGCATTTTCTTTCATTCTTGCACTGTTTGTTAATATTCAGGAGAGAAGAGCTTTAAACAAAAGTAGGAGAAATGATATGCTGGATCCATTGCTGTTTAATGACGATGGAACTAATTCAGATCTTAATGATGAACAACTAATTGACTTGTTGATCACATTCATTTATTCTGGATATGGGACTGTGTCGACTACTTCAATGATGGCTATCAAGTATCTACATGACAACCCAAATGCCCTAAGGGAATTATTGGTGAGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	AAF65846.1	6.0e-61	aquaporin 2
Swissprot	Q9XF59.1	1.0e-60	ZmPIP1b
trEMBL	Q9M4S9	4.3e-61	Aquaporin 2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G23400.1	68.21	1e-61	233	PIP1;5;PIP1D	plasma membrane intrinsic protein 1;5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g69494	AT4G23400.1	173	37	2	68	225	87	256	68.21	1e-61	233
g69494	AT4G00430.1	173	36	2	68	225	87	256	68.79	3e-60	228
g69494	AT1G01620.1	173	37	2	68	225	86	255	68.21	6e-60	227

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00230.17	MIP	Family	76	225	139.6	1.1e-40
PF00067.19	p450	Domain	227	294	26.4	2.5e-06

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0016021	C	integral component of membrane
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005887	C	integral component of plasma membrane
GO:0005215	F	transporter activity
GO:0022857	F	transmembrane transporter activity
GO:0005372	F	water transmembrane transporter activity
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0006810	P	transport
GO:0006811	P	ion transport
GO:0006833	P	water transport
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0022607	P	cellular component assembly
GO:0015250	F	water channel activity
GO:0015267	F	channel activity
GO:0015318	F	inorganic solute uptake transmembrane transporter activity
GO:0016043	P	cellular component organization
GO:0022803	F	passive transmembrane transporter activity
GO:0022838	F	substrate-specific channel activity
GO:0031224	C	intrinsic component of membrane
GO:0031226	C	intrinsic component of plasma membrane
GO:0032991	C	macromolecular complex
GO:0034220	P	ion transmembrane transport
GO:0042044	P	fluid transport
GO:0051260	P	protein homooligomerization
GO:0043933	P	macromolecular complex subunit organization
GO:0044085	P	cellular component biogenesis
GO:0044424	C	intracellular part
GO:0044425	C	membrane part
GO:0044444	C	cytoplasmic part
GO:0044459	C	plasma membrane part
GO:0044464	C	cell part
GO:0051262	P	protein tetramerization
GO:0051179	P	localization
GO:0051234	P	establishment of localization
GO:0051259	P	protein oligomerization
GO:0051289	P	protein homotetramerization
GO:0051290	P	protein heterotetramerization
GO:0051291	P	protein heterooligomerization
GO:0055085	P	transmembrane transport
GO:0065003	P	macromolecular complex assembly
GO:0071840	P	cellular component organization or biogenesis
GO:0071944	C	cell periphery

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09872	PIP; aquaporin PIP	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network